Experiment: RCH2_defined_noCarbon with Mixed culture; Cupriavidus sp. AnTP704 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS13945 and BWI76_RS13950 are separated by 46 nucleotides BWI76_RS13950 and BWI76_RS13955 are separated by 43 nucleotides BWI76_RS13955 and BWI76_RS13960 are separated by 346 nucleotides
BWI76_RS13945: BWI76_RS13945 - lysine exporter protein LysE/YggA, at 2,911,708 to 2,912,340
_RS13945
BWI76_RS13950: BWI76_RS13950 - hypothetical protein, at 2,912,387 to 2,913,079
_RS13950
BWI76_RS13955: BWI76_RS13955 - hypothetical protein, at 2,913,123 to 2,913,725
_RS13955
BWI76_RS13960: BWI76_RS13960 - urea ABC transporter periplasmic protein, at 2,914,072 to 2,915,130
_RS13960
Position (kb)
2913
2914 Strain fitness (log2 ratio)
-1
0
1
2 at 2912.356 kb on + strand at 2912.671 kb on + strand, within BWI76_RS13950 at 2912.740 kb on + strand, within BWI76_RS13950 at 2912.823 kb on - strand, within BWI76_RS13950 at 2912.962 kb on + strand, within BWI76_RS13950 at 2912.980 kb on - strand, within BWI76_RS13950 at 2913.054 kb on - strand at 2913.300 kb on + strand, within BWI76_RS13955 at 2913.662 kb on - strand, within BWI76_RS13955 at 2913.747 kb on + strand at 2913.947 kb on + strand at 2913.953 kb on + strand at 2913.993 kb on - strand at 2914.099 kb on + strand at 2914.175 kb on - strand at 2914.626 kb on + strand, within BWI76_RS13960 at 2914.686 kb on - strand, within BWI76_RS13960 at 2914.688 kb on - strand, within BWI76_RS13960
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Mixed culture; Cupriavidus sp. AnTP704 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x remove 2,912,356 + -0.1 2,912,671 + BWI76_RS13950 0.41 +2.2 2,912,740 + BWI76_RS13950 0.51 -1.0 2,912,823 - BWI76_RS13950 0.63 -0.9 2,912,962 + BWI76_RS13950 0.83 -0.7 2,912,980 - BWI76_RS13950 0.86 -0.1 2,913,054 - +0.6 2,913,300 + BWI76_RS13955 0.29 +1.1 2,913,662 - BWI76_RS13955 0.89 +0.3 2,913,747 + +0.1 2,913,947 + +0.8 2,913,953 + +0.1 2,913,993 - +0.3 2,914,099 + -1.4 2,914,175 - +0.6 2,914,626 + BWI76_RS13960 0.52 -0.4 2,914,686 - BWI76_RS13960 0.58 -0.5 2,914,688 - BWI76_RS13960 0.58 -0.1
Or see this region's nucleotide sequence