Experiment: RCH2_defined_noCarbon with Mixed culture; Cupriavidus sp. AnTP704 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS11850 and BWI76_RS11855 are separated by 3 nucleotides BWI76_RS11855 and BWI76_RS11860 overlap by 1 nucleotides
BWI76_RS11850: BWI76_RS11850 - bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase, at 2,490,972 to 2,492,330
_RS11850
BWI76_RS11855: BWI76_RS11855 - bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase, at 2,492,334 to 2,493,929
_RS11855
BWI76_RS11860: BWI76_RS11860 - anthranilate synthase component I, at 2,493,929 to 2,495,491
_RS11860
Position (kb)
2492
2493
2494 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2491.426 kb on - strand, within BWI76_RS11850 at 2491.542 kb on + strand, within BWI76_RS11850 at 2491.601 kb on - strand, within BWI76_RS11850 at 2491.672 kb on - strand, within BWI76_RS11850 at 2491.712 kb on - strand, within BWI76_RS11850 at 2491.732 kb on - strand, within BWI76_RS11850 at 2491.855 kb on + strand, within BWI76_RS11850 at 2492.072 kb on + strand, within BWI76_RS11850 at 2492.072 kb on + strand, within BWI76_RS11850 at 2492.080 kb on - strand, within BWI76_RS11850 at 2492.139 kb on + strand, within BWI76_RS11850 at 2492.341 kb on + strand at 2492.349 kb on - strand at 2492.364 kb on + strand at 2492.372 kb on - strand at 2492.372 kb on - strand at 2492.539 kb on - strand, within BWI76_RS11855 at 2492.739 kb on - strand, within BWI76_RS11855 at 2493.033 kb on + strand, within BWI76_RS11855 at 2493.262 kb on + strand, within BWI76_RS11855 at 2493.342 kb on - strand, within BWI76_RS11855 at 2493.352 kb on - strand, within BWI76_RS11855 at 2493.681 kb on + strand, within BWI76_RS11855 at 2493.766 kb on - strand, within BWI76_RS11855 at 2493.810 kb on - strand at 2493.856 kb on - strand at 2494.054 kb on - strand at 2494.333 kb on + strand, within BWI76_RS11860 at 2494.357 kb on + strand at 2494.359 kb on + strand, within BWI76_RS11860 at 2494.447 kb on - strand, within BWI76_RS11860 at 2494.583 kb on - strand, within BWI76_RS11860 at 2494.752 kb on + strand, within BWI76_RS11860 at 2494.845 kb on - strand, within BWI76_RS11860
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Mixed culture; Cupriavidus sp. AnTP704 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x remove 2,491,426 - BWI76_RS11850 0.33 -1.8 2,491,542 + BWI76_RS11850 0.42 -1.5 2,491,601 - BWI76_RS11850 0.46 -1.3 2,491,672 - BWI76_RS11850 0.52 -2.7 2,491,712 - BWI76_RS11850 0.54 -1.2 2,491,732 - BWI76_RS11850 0.56 +1.0 2,491,855 + BWI76_RS11850 0.65 -1.8 2,492,072 + BWI76_RS11850 0.81 -2.2 2,492,072 + BWI76_RS11850 0.81 -2.7 2,492,080 - BWI76_RS11850 0.82 -2.3 2,492,139 + BWI76_RS11850 0.86 +0.0 2,492,341 + -1.7 2,492,349 - +0.9 2,492,364 + +1.0 2,492,372 - -1.2 2,492,372 - -2.0 2,492,539 - BWI76_RS11855 0.13 -1.5 2,492,739 - BWI76_RS11855 0.25 -2.3 2,493,033 + BWI76_RS11855 0.44 -1.8 2,493,262 + BWI76_RS11855 0.58 -2.3 2,493,342 - BWI76_RS11855 0.63 -2.3 2,493,352 - BWI76_RS11855 0.64 -2.8 2,493,681 + BWI76_RS11855 0.84 -2.1 2,493,766 - BWI76_RS11855 0.90 -3.1 2,493,810 - -2.0 2,493,856 - -1.8 2,494,054 - -0.3 2,494,333 + BWI76_RS11860 0.26 -1.7 2,494,357 + -0.5 2,494,359 + BWI76_RS11860 0.28 -1.4 2,494,447 - BWI76_RS11860 0.33 -1.1 2,494,583 - BWI76_RS11860 0.42 -2.7 2,494,752 + BWI76_RS11860 0.53 -1.8 2,494,845 - BWI76_RS11860 0.59 +1.0
Or see this region's nucleotide sequence