Experiment: RCH2_defined_noCarbon with Mixed culture; Cupriavidus sp. AnTP704 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS11825 and BWI76_RS11830 are separated by 154 nucleotides BWI76_RS11830 and BWI76_RS11835 are separated by 77 nucleotides BWI76_RS11835 and BWI76_RS11840 are separated by 32 nucleotides
BWI76_RS11825: BWI76_RS11825 - LysR family transcriptional regulator, at 2,486,393 to 2,487,292
_RS11825
BWI76_RS11830: BWI76_RS11830 - hypothetical protein, at 2,487,447 to 2,488,394
_RS11830
BWI76_RS11835: BWI76_RS11835 - putative regulatory protein MarR, at 2,488,472 to 2,488,927
_RS11835
BWI76_RS11840: BWI76_RS11840 - tryptophan synthase subunit alpha, at 2,488,960 to 2,489,769
_RS11840
Position (kb)
2487
2488
2489 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2486.545 kb on + strand, within BWI76_RS11825 at 2486.553 kb on - strand, within BWI76_RS11825 at 2486.633 kb on + strand, within BWI76_RS11825 at 2486.977 kb on + strand, within BWI76_RS11825 at 2487.534 kb on - strand at 2487.607 kb on - strand, within BWI76_RS11830 at 2487.738 kb on - strand, within BWI76_RS11830 at 2487.964 kb on + strand, within BWI76_RS11830 at 2488.110 kb on + strand, within BWI76_RS11830 at 2488.133 kb on + strand, within BWI76_RS11830 at 2488.242 kb on + strand, within BWI76_RS11830 at 2488.718 kb on + strand, within BWI76_RS11835 at 2488.873 kb on - strand, within BWI76_RS11835 at 2489.110 kb on + strand, within BWI76_RS11840 at 2489.118 kb on - strand, within BWI76_RS11840 at 2489.335 kb on - strand, within BWI76_RS11840
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Mixed culture; Cupriavidus sp. AnTP704 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x remove 2,486,545 + BWI76_RS11825 0.17 +0.9 2,486,553 - BWI76_RS11825 0.18 +0.9 2,486,633 + BWI76_RS11825 0.27 +0.1 2,486,977 + BWI76_RS11825 0.65 +0.6 2,487,534 - +0.8 2,487,607 - BWI76_RS11830 0.17 +0.6 2,487,738 - BWI76_RS11830 0.31 -1.0 2,487,964 + BWI76_RS11830 0.55 +0.9 2,488,110 + BWI76_RS11830 0.70 +2.6 2,488,133 + BWI76_RS11830 0.72 +0.4 2,488,242 + BWI76_RS11830 0.84 +0.6 2,488,718 + BWI76_RS11835 0.54 -0.0 2,488,873 - BWI76_RS11835 0.88 -2.0 2,489,110 + BWI76_RS11840 0.19 -2.0 2,489,118 - BWI76_RS11840 0.20 -2.3 2,489,335 - BWI76_RS11840 0.46 -2.1
Or see this region's nucleotide sequence