Experiment: RCH2_defined_noCarbon with Mixed culture; Cupriavidus sp. AnTP704 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS11805 and BWI76_RS11810 are separated by 313 nucleotides BWI76_RS11810 and BWI76_RS11815 are separated by 97 nucleotides BWI76_RS11815 and BWI76_RS11820 are separated by 214 nucleotides
BWI76_RS11805: BWI76_RS11805 - hypothetical protein, at 2,483,314 to 2,484,057
_RS11805
BWI76_RS11810: BWI76_RS11810 - outer membrane protein OmpW, at 2,484,371 to 2,485,009
_RS11810
BWI76_RS11815: BWI76_RS11815 - hypothetical protein, at 2,485,107 to 2,485,352
_RS11815
BWI76_RS11820: BWI76_RS11820 - short-chain dehydrogenase/reductase SDR, at 2,485,567 to 2,486,271
_RS11820
Position (kb)
2484
2485
2486 Strain fitness (log2 ratio)
-2
-1
0
1 at 2483.407 kb on - strand, within BWI76_RS11805 at 2483.509 kb on + strand, within BWI76_RS11805 at 2483.919 kb on + strand, within BWI76_RS11805 at 2483.952 kb on - strand, within BWI76_RS11805 at 2484.066 kb on - strand at 2484.120 kb on + strand at 2484.126 kb on - strand at 2484.197 kb on + strand at 2484.323 kb on + strand at 2484.521 kb on - strand, within BWI76_RS11810 at 2484.588 kb on + strand, within BWI76_RS11810 at 2484.801 kb on + strand, within BWI76_RS11810 at 2485.030 kb on + strand at 2485.279 kb on + strand, within BWI76_RS11815 at 2485.498 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Mixed culture; Cupriavidus sp. AnTP704 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x remove 2,483,407 - BWI76_RS11805 0.12 -0.5 2,483,509 + BWI76_RS11805 0.26 -0.3 2,483,919 + BWI76_RS11805 0.81 +0.6 2,483,952 - BWI76_RS11805 0.86 -0.5 2,484,066 - +1.1 2,484,120 + +0.2 2,484,126 - +0.7 2,484,197 + -2.4 2,484,323 + +0.2 2,484,521 - BWI76_RS11810 0.23 +0.3 2,484,588 + BWI76_RS11810 0.34 -1.0 2,484,801 + BWI76_RS11810 0.67 +1.5 2,485,030 + +1.0 2,485,279 + BWI76_RS11815 0.70 +0.7 2,485,498 - +0.1
Or see this region's nucleotide sequence