Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS07545

Experiment: RCH2_defined_noCarbon with Mixed culture; Cupriavidus sp. AnTP704 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS07540 and BWI76_RS07545 are separated by 17 nucleotidesBWI76_RS07545 and BWI76_RS07550 overlap by 11 nucleotides BWI76_RS07540: BWI76_RS07540 - dipeptide ABC transporter ATP-binding protein DppD, at 1,595,736 to 1,596,746 _RS07540 BWI76_RS07545: BWI76_RS07545 - amidase, at 1,596,764 to 1,597,948 _RS07545 BWI76_RS07550: BWI76_RS07550 - Zn-dependent hydrolase, at 1,597,938 to 1,599,206 _RS07550 Position (kb) 1596 1597 1598Strain fitness (log2 ratio) -1 0 1 2at 1595.783 kb on - strandat 1595.824 kb on + strandat 1595.892 kb on - strand, within BWI76_RS07540at 1596.345 kb on + strand, within BWI76_RS07540at 1596.422 kb on + strand, within BWI76_RS07540at 1596.548 kb on + strand, within BWI76_RS07540at 1596.627 kb on + strand, within BWI76_RS07540at 1597.190 kb on + strand, within BWI76_RS07545at 1597.345 kb on - strand, within BWI76_RS07545at 1597.345 kb on - strand, within BWI76_RS07545at 1597.449 kb on + strand, within BWI76_RS07545at 1597.720 kb on - strand, within BWI76_RS07545at 1597.753 kb on + strand, within BWI76_RS07545at 1597.976 kb on - strandat 1598.065 kb on + strand, within BWI76_RS07550at 1598.342 kb on + strand, within BWI76_RS07550at 1598.471 kb on - strand, within BWI76_RS07550at 1598.774 kb on + strand, within BWI76_RS07550at 1598.852 kb on + strand, within BWI76_RS07550

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Per-strain Table

Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Mixed culture; Cupriavidus sp. AnTP704 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x
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1,595,783 - -0.4
1,595,824 + +0.8
1,595,892 - BWI76_RS07540 0.15 +0.4
1,596,345 + BWI76_RS07540 0.60 +0.0
1,596,422 + BWI76_RS07540 0.68 +1.0
1,596,548 + BWI76_RS07540 0.80 +0.1
1,596,627 + BWI76_RS07540 0.88 +0.5
1,597,190 + BWI76_RS07545 0.36 +0.5
1,597,345 - BWI76_RS07545 0.49 +0.1
1,597,345 - BWI76_RS07545 0.49 +1.7
1,597,449 + BWI76_RS07545 0.58 +0.7
1,597,720 - BWI76_RS07545 0.81 -0.7
1,597,753 + BWI76_RS07545 0.83 +2.5
1,597,976 - -0.3
1,598,065 + BWI76_RS07550 0.10 +0.8
1,598,342 + BWI76_RS07550 0.32 +0.3
1,598,471 - BWI76_RS07550 0.42 -0.3
1,598,774 + BWI76_RS07550 0.66 +0.3
1,598,852 + BWI76_RS07550 0.72 +0.2

Or see this region's nucleotide sequence