Experiment: RCH2_defined_noCarbon with Mixed culture; Cupriavidus sp. AnTP704 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS06070 and BWI76_RS06075 overlap by 4 nucleotides BWI76_RS06075 and BWI76_RS06080 overlap by 4 nucleotides BWI76_RS06080 and BWI76_RS06085 are separated by 82 nucleotides
BWI76_RS06070: BWI76_RS06070 - taurine transporter ATP-binding subunit, at 1,275,872 to 1,276,639
_RS06070
BWI76_RS06075: BWI76_RS06075 - taurine transporter subunit, at 1,276,636 to 1,277,463
_RS06075
BWI76_RS06080: BWI76_RS06080 - taurine dioxygenase, at 1,277,460 to 1,278,311
_RS06080
BWI76_RS06085: BWI76_RS06085 - hypothetical protein, at 1,278,394 to 1,280,112
_RS06085
Position (kb)
1277
1278
1279 Strain fitness (log2 ratio)
-2
-1
0
1 at 1276.606 kb on - strand at 1276.708 kb on + strand at 1276.735 kb on + strand, within BWI76_RS06075 at 1277.315 kb on + strand, within BWI76_RS06075 at 1277.902 kb on - strand, within BWI76_RS06080 at 1278.216 kb on + strand, within BWI76_RS06080 at 1278.224 kb on - strand, within BWI76_RS06080 at 1278.257 kb on + strand at 1278.460 kb on + strand at 1278.468 kb on - strand at 1278.552 kb on + strand at 1278.554 kb on + strand at 1278.563 kb on + strand at 1278.801 kb on + strand, within BWI76_RS06085 at 1278.847 kb on - strand, within BWI76_RS06085 at 1278.878 kb on - strand, within BWI76_RS06085 at 1278.888 kb on + strand, within BWI76_RS06085 at 1278.896 kb on - strand, within BWI76_RS06085 at 1278.957 kb on + strand, within BWI76_RS06085
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Mixed culture; Cupriavidus sp. AnTP704 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x remove 1,276,606 - +0.1 1,276,708 + +0.4 1,276,735 + BWI76_RS06075 0.12 +0.0 1,277,315 + BWI76_RS06075 0.82 -0.2 1,277,902 - BWI76_RS06080 0.52 +0.7 1,278,216 + BWI76_RS06080 0.89 +0.9 1,278,224 - BWI76_RS06080 0.90 +0.9 1,278,257 + +1.0 1,278,460 + +0.4 1,278,468 - +0.6 1,278,552 + -0.5 1,278,554 + -0.1 1,278,563 + +0.4 1,278,801 + BWI76_RS06085 0.24 -2.2 1,278,847 - BWI76_RS06085 0.26 -0.4 1,278,878 - BWI76_RS06085 0.28 +0.2 1,278,888 + BWI76_RS06085 0.29 -1.1 1,278,896 - BWI76_RS06085 0.29 +0.2 1,278,957 + BWI76_RS06085 0.33 -0.2
Or see this region's nucleotide sequence