Experiment: RCH2_defined_noCarbon with Mixed culture; Cupriavidus sp. AnTP704 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS03360 and BWI76_RS03365 are separated by 311 nucleotides BWI76_RS03365 and BWI76_RS03370 overlap by 4 nucleotides
BWI76_RS03360: BWI76_RS03360 - IS3 family transposase, at 692,342 to 693,549
_RS03360
BWI76_RS03365: BWI76_RS03365 - N-6 DNA methylase, at 693,861 to 694,754
_RS03365
BWI76_RS03370: BWI76_RS03370 - type I restriction-modification system subunit S, at 694,751 to 696,202
_RS03370
Position (kb) 693
694
695 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 693.026 kb on + strand, within BWI76_RS03360 at 693.098 kb on + strand, within BWI76_RS03360 at 693.165 kb on - strand at 693.167 kb on - strand, within BWI76_RS03360 at 693.173 kb on + strand, within BWI76_RS03360 at 693.191 kb on + strand, within BWI76_RS03360 at 693.249 kb on - strand, within BWI76_RS03360 at 693.323 kb on + strand, within BWI76_RS03360 at 693.452 kb on - strand at 693.473 kb on - strand at 693.476 kb on - strand at 693.488 kb on - strand at 693.506 kb on + strand at 693.514 kb on - strand at 693.514 kb on - strand at 693.522 kb on + strand at 693.522 kb on + strand at 693.566 kb on + strand at 693.568 kb on - strand at 693.579 kb on + strand at 693.615 kb on + strand at 693.623 kb on - strand at 693.680 kb on - strand at 693.682 kb on + strand at 693.690 kb on - strand at 693.706 kb on + strand at 693.706 kb on + strand at 693.706 kb on + strand at 693.714 kb on - strand at 693.714 kb on - strand at 693.714 kb on - strand at 693.804 kb on + strand at 693.834 kb on + strand at 693.887 kb on - strand at 693.888 kb on - strand at 693.913 kb on - strand at 693.934 kb on - strand at 693.988 kb on + strand, within BWI76_RS03365 at 693.996 kb on - strand, within BWI76_RS03365 at 694.002 kb on + strand, within BWI76_RS03365 at 694.002 kb on + strand, within BWI76_RS03365 at 694.002 kb on + strand, within BWI76_RS03365 at 694.010 kb on - strand, within BWI76_RS03365 at 694.010 kb on - strand, within BWI76_RS03365 at 694.021 kb on + strand, within BWI76_RS03365 at 694.029 kb on - strand, within BWI76_RS03365 at 694.061 kb on + strand, within BWI76_RS03365 at 694.061 kb on + strand, within BWI76_RS03365 at 694.069 kb on - strand, within BWI76_RS03365 at 694.109 kb on + strand, within BWI76_RS03365 at 694.122 kb on - strand, within BWI76_RS03365 at 694.122 kb on - strand, within BWI76_RS03365 at 694.126 kb on + strand, within BWI76_RS03365 at 694.126 kb on + strand, within BWI76_RS03365 at 694.134 kb on - strand, within BWI76_RS03365 at 694.134 kb on - strand, within BWI76_RS03365 at 694.134 kb on - strand, within BWI76_RS03365 at 694.134 kb on - strand, within BWI76_RS03365 at 694.134 kb on - strand, within BWI76_RS03365 at 694.137 kb on - strand, within BWI76_RS03365 at 694.138 kb on + strand, within BWI76_RS03365 at 694.146 kb on - strand, within BWI76_RS03365 at 694.156 kb on + strand, within BWI76_RS03365 at 694.164 kb on - strand, within BWI76_RS03365 at 694.164 kb on - strand, within BWI76_RS03365 at 694.164 kb on - strand, within BWI76_RS03365 at 694.229 kb on + strand, within BWI76_RS03365 at 694.266 kb on + strand, within BWI76_RS03365 at 694.292 kb on + strand, within BWI76_RS03365 at 694.294 kb on + strand, within BWI76_RS03365 at 694.317 kb on - strand, within BWI76_RS03365 at 694.321 kb on + strand, within BWI76_RS03365 at 694.338 kb on - strand at 694.387 kb on + strand, within BWI76_RS03365 at 694.389 kb on + strand, within BWI76_RS03365 at 694.389 kb on + strand, within BWI76_RS03365 at 694.397 kb on - strand, within BWI76_RS03365 at 694.397 kb on - strand, within BWI76_RS03365 at 694.397 kb on - strand, within BWI76_RS03365 at 694.410 kb on - strand, within BWI76_RS03365 at 694.474 kb on + strand, within BWI76_RS03365 at 694.482 kb on - strand, within BWI76_RS03365 at 694.495 kb on - strand at 694.509 kb on + strand, within BWI76_RS03365 at 694.509 kb on + strand, within BWI76_RS03365 at 694.515 kb on + strand, within BWI76_RS03365 at 694.568 kb on + strand, within BWI76_RS03365 at 694.571 kb on + strand, within BWI76_RS03365 at 694.572 kb on + strand, within BWI76_RS03365 at 694.590 kb on + strand, within BWI76_RS03365 at 694.614 kb on + strand, within BWI76_RS03365 at 694.614 kb on + strand, within BWI76_RS03365 at 694.614 kb on + strand, within BWI76_RS03365 at 694.624 kb on + strand, within BWI76_RS03365 at 694.624 kb on + strand, within BWI76_RS03365 at 694.632 kb on - strand, within BWI76_RS03365 at 694.632 kb on - strand, within BWI76_RS03365 at 694.644 kb on + strand, within BWI76_RS03365 at 694.649 kb on + strand, within BWI76_RS03365 at 694.649 kb on + strand, within BWI76_RS03365 at 694.649 kb on + strand, within BWI76_RS03365 at 694.649 kb on + strand, within BWI76_RS03365 at 694.649 kb on + strand, within BWI76_RS03365 at 694.649 kb on + strand, within BWI76_RS03365 at 694.649 kb on + strand, within BWI76_RS03365 at 694.649 kb on + strand, within BWI76_RS03365 at 694.649 kb on + strand, within BWI76_RS03365 at 694.650 kb on + strand, within BWI76_RS03365 at 694.657 kb on - strand, within BWI76_RS03365 at 694.658 kb on - strand, within BWI76_RS03365 at 694.659 kb on + strand, within BWI76_RS03365 at 694.660 kb on + strand, within BWI76_RS03365 at 694.670 kb on + strand at 694.678 kb on - strand at 694.682 kb on + strand at 694.682 kb on + strand at 694.682 kb on + strand at 694.682 kb on + strand at 694.690 kb on - strand at 694.709 kb on + strand at 694.709 kb on + strand at 694.717 kb on - strand at 694.724 kb on + strand at 694.731 kb on + strand at 694.741 kb on + strand at 694.743 kb on + strand at 694.749 kb on - strand at 694.749 kb on - strand at 694.751 kb on - strand at 694.821 kb on - strand at 694.833 kb on + strand at 694.871 kb on + strand at 694.893 kb on + strand at 694.893 kb on + strand at 694.893 kb on + strand at 694.893 kb on + strand at 694.895 kb on + strand at 694.903 kb on - strand at 694.905 kb on + strand, within BWI76_RS03370 at 694.905 kb on + strand, within BWI76_RS03370 at 694.905 kb on + strand, within BWI76_RS03370 at 694.917 kb on + strand, within BWI76_RS03370 at 694.917 kb on + strand, within BWI76_RS03370 at 694.917 kb on + strand, within BWI76_RS03370 at 694.917 kb on + strand, within BWI76_RS03370 at 694.917 kb on + strand, within BWI76_RS03370 at 694.917 kb on + strand, within BWI76_RS03370 at 694.917 kb on + strand, within BWI76_RS03370 at 694.923 kb on + strand, within BWI76_RS03370 at 694.925 kb on - strand, within BWI76_RS03370 at 694.931 kb on - strand, within BWI76_RS03370 at 694.963 kb on + strand, within BWI76_RS03370 at 695.008 kb on + strand, within BWI76_RS03370 at 695.029 kb on + strand, within BWI76_RS03370 at 695.029 kb on + strand, within BWI76_RS03370 at 695.029 kb on + strand at 695.029 kb on + strand, within BWI76_RS03370 at 695.029 kb on + strand, within BWI76_RS03370 at 695.029 kb on + strand, within BWI76_RS03370 at 695.029 kb on + strand, within BWI76_RS03370 at 695.029 kb on + strand, within BWI76_RS03370 at 695.029 kb on + strand, within BWI76_RS03370 at 695.037 kb on - strand, within BWI76_RS03370 at 695.037 kb on - strand, within BWI76_RS03370 at 695.037 kb on - strand, within BWI76_RS03370 at 695.037 kb on - strand, within BWI76_RS03370 at 695.037 kb on - strand, within BWI76_RS03370 at 695.052 kb on - strand, within BWI76_RS03370 at 695.139 kb on + strand, within BWI76_RS03370 at 695.144 kb on + strand, within BWI76_RS03370 at 695.147 kb on - strand, within BWI76_RS03370 at 695.154 kb on + strand, within BWI76_RS03370 at 695.236 kb on + strand, within BWI76_RS03370 at 695.321 kb on + strand, within BWI76_RS03370 at 695.321 kb on + strand, within BWI76_RS03370 at 695.321 kb on + strand, within BWI76_RS03370 at 695.321 kb on + strand, within BWI76_RS03370 at 695.321 kb on + strand, within BWI76_RS03370 at 695.321 kb on + strand, within BWI76_RS03370 at 695.321 kb on + strand, within BWI76_RS03370 at 695.321 kb on + strand, within BWI76_RS03370 at 695.321 kb on + strand, within BWI76_RS03370 at 695.321 kb on + strand, within BWI76_RS03370 at 695.321 kb on + strand, within BWI76_RS03370 at 695.321 kb on + strand, within BWI76_RS03370 at 695.321 kb on + strand, within BWI76_RS03370 at 695.321 kb on + strand, within BWI76_RS03370 at 695.321 kb on + strand, within BWI76_RS03370 at 695.321 kb on + strand, within BWI76_RS03370 at 695.321 kb on + strand, within BWI76_RS03370 at 695.321 kb on + strand, within BWI76_RS03370 at 695.321 kb on + strand, within BWI76_RS03370 at 695.321 kb on + strand, within BWI76_RS03370 at 695.321 kb on + strand, within BWI76_RS03370 at 695.321 kb on + strand, within BWI76_RS03370 at 695.321 kb on + strand, within BWI76_RS03370 at 695.321 kb on + strand, within BWI76_RS03370 at 695.321 kb on + strand, within BWI76_RS03370 at 695.327 kb on - strand, within BWI76_RS03370 at 695.329 kb on - strand at 695.347 kb on + strand at 695.354 kb on + strand, within BWI76_RS03370 at 695.355 kb on - strand, within BWI76_RS03370 at 695.355 kb on - strand, within BWI76_RS03370 at 695.361 kb on + strand, within BWI76_RS03370 at 695.407 kb on - strand, within BWI76_RS03370 at 695.409 kb on - strand, within BWI76_RS03370 at 695.412 kb on + strand, within BWI76_RS03370 at 695.412 kb on + strand, within BWI76_RS03370 at 695.420 kb on - strand, within BWI76_RS03370 at 695.420 kb on - strand, within BWI76_RS03370 at 695.420 kb on - strand, within BWI76_RS03370 at 695.420 kb on - strand, within BWI76_RS03370 at 695.420 kb on - strand, within BWI76_RS03370 at 695.420 kb on - strand, within BWI76_RS03370 at 695.432 kb on - strand, within BWI76_RS03370 at 695.442 kb on - strand, within BWI76_RS03370 at 695.447 kb on - strand, within BWI76_RS03370 at 695.449 kb on + strand, within BWI76_RS03370 at 695.450 kb on + strand, within BWI76_RS03370 at 695.479 kb on - strand, within BWI76_RS03370 at 695.499 kb on + strand, within BWI76_RS03370 at 695.511 kb on - strand, within BWI76_RS03370 at 695.539 kb on - strand, within BWI76_RS03370 at 695.593 kb on - strand, within BWI76_RS03370 at 695.679 kb on + strand, within BWI76_RS03370 at 695.734 kb on + strand, within BWI76_RS03370
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Mixed culture; Cupriavidus sp. AnTP704 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x remove 693,026 + BWI76_RS03360 0.57 +0.9 693,098 + BWI76_RS03360 0.63 +1.4 693,165 - -0.9 693,167 - BWI76_RS03360 0.68 +0.6 693,173 + BWI76_RS03360 0.69 -0.7 693,191 + BWI76_RS03360 0.70 -0.1 693,249 - BWI76_RS03360 0.75 +0.2 693,323 + BWI76_RS03360 0.81 +0.4 693,452 - -3.3 693,473 - +0.6 693,476 - -0.4 693,488 - -0.5 693,506 + -0.2 693,514 - +0.2 693,514 - +0.1 693,522 + -1.4 693,522 + +0.2 693,566 + -0.5 693,568 - +1.1 693,579 + +0.9 693,615 + +1.1 693,623 - +0.4 693,680 - -1.2 693,682 + -0.1 693,690 - +0.8 693,706 + +0.3 693,706 + -0.6 693,706 + +0.5 693,714 - +2.7 693,714 - -0.2 693,714 - -0.6 693,804 + -0.1 693,834 + +1.1 693,887 - -1.2 693,888 - -1.2 693,913 - -0.3 693,934 - +0.1 693,988 + BWI76_RS03365 0.14 -1.0 693,996 - BWI76_RS03365 0.15 -0.1 694,002 + BWI76_RS03365 0.16 +1.1 694,002 + BWI76_RS03365 0.16 +0.5 694,002 + BWI76_RS03365 0.16 +0.1 694,010 - BWI76_RS03365 0.17 -0.2 694,010 - BWI76_RS03365 0.17 +0.3 694,021 + BWI76_RS03365 0.18 -1.3 694,029 - BWI76_RS03365 0.19 +0.2 694,061 + BWI76_RS03365 0.22 +0.2 694,061 + BWI76_RS03365 0.22 +0.7 694,069 - BWI76_RS03365 0.23 +0.1 694,109 + BWI76_RS03365 0.28 -0.4 694,122 - BWI76_RS03365 0.29 +0.6 694,122 - BWI76_RS03365 0.29 -1.4 694,126 + BWI76_RS03365 0.30 -0.5 694,126 + BWI76_RS03365 0.30 -1.2 694,134 - BWI76_RS03365 0.31 -0.4 694,134 - BWI76_RS03365 0.31 -1.0 694,134 - BWI76_RS03365 0.31 -0.4 694,134 - BWI76_RS03365 0.31 +0.0 694,134 - BWI76_RS03365 0.31 -0.8 694,137 - BWI76_RS03365 0.31 -0.4 694,138 + BWI76_RS03365 0.31 +0.3 694,146 - BWI76_RS03365 0.32 +0.3 694,156 + BWI76_RS03365 0.33 +0.2 694,164 - BWI76_RS03365 0.34 -1.0 694,164 - BWI76_RS03365 0.34 +0.3 694,164 - BWI76_RS03365 0.34 +0.4 694,229 + BWI76_RS03365 0.41 -0.6 694,266 + BWI76_RS03365 0.45 -0.8 694,292 + BWI76_RS03365 0.48 -0.4 694,294 + BWI76_RS03365 0.48 +0.7 694,317 - BWI76_RS03365 0.51 +0.5 694,321 + BWI76_RS03365 0.51 -2.4 694,338 - -0.9 694,387 + BWI76_RS03365 0.59 -1.2 694,389 + BWI76_RS03365 0.59 -0.7 694,389 + BWI76_RS03365 0.59 -0.9 694,397 - BWI76_RS03365 0.60 +0.2 694,397 - BWI76_RS03365 0.60 -2.2 694,397 - BWI76_RS03365 0.60 +0.0 694,410 - BWI76_RS03365 0.61 +0.1 694,474 + BWI76_RS03365 0.69 -1.9 694,482 - BWI76_RS03365 0.69 +0.6 694,495 - +1.9 694,509 + BWI76_RS03365 0.72 +0.9 694,509 + BWI76_RS03365 0.72 +0.8 694,515 + BWI76_RS03365 0.73 -0.0 694,568 + BWI76_RS03365 0.79 +0.3 694,571 + BWI76_RS03365 0.79 -1.5 694,572 + BWI76_RS03365 0.80 -1.0 694,590 + BWI76_RS03365 0.82 -0.4 694,614 + BWI76_RS03365 0.84 -0.5 694,614 + BWI76_RS03365 0.84 -0.4 694,614 + BWI76_RS03365 0.84 -0.4 694,624 + BWI76_RS03365 0.85 +0.6 694,624 + BWI76_RS03365 0.85 -0.0 694,632 - BWI76_RS03365 0.86 +0.1 694,632 - BWI76_RS03365 0.86 -1.4 694,644 + BWI76_RS03365 0.88 -0.4 694,649 + BWI76_RS03365 0.88 +0.4 694,649 + BWI76_RS03365 0.88 +0.7 694,649 + BWI76_RS03365 0.88 -0.4 694,649 + BWI76_RS03365 0.88 +0.6 694,649 + BWI76_RS03365 0.88 -2.0 694,649 + BWI76_RS03365 0.88 -1.0 694,649 + BWI76_RS03365 0.88 +1.0 694,649 + BWI76_RS03365 0.88 +0.3 694,649 + BWI76_RS03365 0.88 -0.9 694,650 + BWI76_RS03365 0.88 +0.1 694,657 - BWI76_RS03365 0.89 -0.6 694,658 - BWI76_RS03365 0.89 -2.0 694,659 + BWI76_RS03365 0.89 +0.4 694,660 + BWI76_RS03365 0.89 -0.4 694,670 + -0.6 694,678 - +0.1 694,682 + +2.1 694,682 + -2.0 694,682 + +0.7 694,682 + -0.4 694,690 - -2.4 694,709 + -0.9 694,709 + -1.6 694,717 - +0.0 694,724 + -1.0 694,731 + +1.5 694,741 + -1.2 694,743 + -0.0 694,749 - -0.8 694,749 - +1.1 694,751 - +0.7 694,821 - -1.4 694,833 + +1.0 694,871 + +1.0 694,893 + +0.5 694,893 + -0.4 694,893 + +2.7 694,893 + -1.4 694,895 + +0.4 694,903 - -0.4 694,905 + BWI76_RS03370 0.11 +0.2 694,905 + BWI76_RS03370 0.11 -0.9 694,905 + BWI76_RS03370 0.11 +0.3 694,917 + BWI76_RS03370 0.11 -0.6 694,917 + BWI76_RS03370 0.11 -1.3 694,917 + BWI76_RS03370 0.11 +0.4 694,917 + BWI76_RS03370 0.11 +1.1 694,917 + BWI76_RS03370 0.11 +0.7 694,917 + BWI76_RS03370 0.11 -0.4 694,917 + BWI76_RS03370 0.11 +0.1 694,923 + BWI76_RS03370 0.12 -0.3 694,925 - BWI76_RS03370 0.12 +1.8 694,931 - BWI76_RS03370 0.12 -1.2 694,963 + BWI76_RS03370 0.15 +0.1 695,008 + BWI76_RS03370 0.18 -0.9 695,029 + BWI76_RS03370 0.19 +1.5 695,029 + BWI76_RS03370 0.19 +1.1 695,029 + -0.4 695,029 + BWI76_RS03370 0.19 -0.1 695,029 + BWI76_RS03370 0.19 -0.9 695,029 + BWI76_RS03370 0.19 +0.7 695,029 + BWI76_RS03370 0.19 -0.5 695,029 + BWI76_RS03370 0.19 -2.0 695,029 + BWI76_RS03370 0.19 +0.1 695,037 - BWI76_RS03370 0.20 +0.1 695,037 - BWI76_RS03370 0.20 -2.6 695,037 - BWI76_RS03370 0.20 +0.8 695,037 - BWI76_RS03370 0.20 -2.4 695,037 - BWI76_RS03370 0.20 -0.4 695,052 - BWI76_RS03370 0.21 +0.2 695,139 + BWI76_RS03370 0.27 +3.5 695,144 + BWI76_RS03370 0.27 +1.1 695,147 - BWI76_RS03370 0.27 -0.4 695,154 + BWI76_RS03370 0.28 +0.1 695,236 + BWI76_RS03370 0.33 -0.4 695,321 + BWI76_RS03370 0.39 +0.1 695,321 + BWI76_RS03370 0.39 -1.2 695,321 + BWI76_RS03370 0.39 -2.2 695,321 + BWI76_RS03370 0.39 +0.1 695,321 + BWI76_RS03370 0.39 +0.0 695,321 + BWI76_RS03370 0.39 -0.4 695,321 + BWI76_RS03370 0.39 -1.2 695,321 + BWI76_RS03370 0.39 -0.1 695,321 + BWI76_RS03370 0.39 -2.0 695,321 + BWI76_RS03370 0.39 +0.3 695,321 + BWI76_RS03370 0.39 -2.3 695,321 + BWI76_RS03370 0.39 -0.7 695,321 + BWI76_RS03370 0.39 +0.5 695,321 + BWI76_RS03370 0.39 -0.8 695,321 + BWI76_RS03370 0.39 -0.5 695,321 + BWI76_RS03370 0.39 +0.8 695,321 + BWI76_RS03370 0.39 -0.4 695,321 + BWI76_RS03370 0.39 -1.2 695,321 + BWI76_RS03370 0.39 -0.1 695,321 + BWI76_RS03370 0.39 -0.9 695,321 + BWI76_RS03370 0.39 +0.3 695,321 + BWI76_RS03370 0.39 +0.6 695,321 + BWI76_RS03370 0.39 -0.5 695,321 + BWI76_RS03370 0.39 -0.2 695,321 + BWI76_RS03370 0.39 -0.6 695,327 - BWI76_RS03370 0.40 +1.0 695,329 - -0.9 695,347 + +0.1 695,354 + BWI76_RS03370 0.42 +2.1 695,355 - BWI76_RS03370 0.42 -2.9 695,355 - BWI76_RS03370 0.42 -0.6 695,361 + BWI76_RS03370 0.42 +1.1 695,407 - BWI76_RS03370 0.45 -0.6 695,409 - BWI76_RS03370 0.45 -0.9 695,412 + BWI76_RS03370 0.46 +1.1 695,412 + BWI76_RS03370 0.46 +1.1 695,420 - BWI76_RS03370 0.46 -0.8 695,420 - BWI76_RS03370 0.46 +0.8 695,420 - BWI76_RS03370 0.46 -0.8 695,420 - BWI76_RS03370 0.46 -1.2 695,420 - BWI76_RS03370 0.46 +0.1 695,420 - BWI76_RS03370 0.46 -0.4 695,432 - BWI76_RS03370 0.47 -0.3 695,442 - BWI76_RS03370 0.48 -0.7 695,447 - BWI76_RS03370 0.48 +0.3 695,449 + BWI76_RS03370 0.48 -3.1 695,450 + BWI76_RS03370 0.48 +0.1 695,479 - BWI76_RS03370 0.50 -0.4 695,499 + BWI76_RS03370 0.52 -1.2 695,511 - BWI76_RS03370 0.52 -1.6 695,539 - BWI76_RS03370 0.54 -1.8 695,593 - BWI76_RS03370 0.58 +1.1 695,679 + BWI76_RS03370 0.64 -0.4 695,734 + BWI76_RS03370 0.68 -1.4
Or see this region's nucleotide sequence