Experiment: RCH2_defined_noCarbon with Mixed culture; Cupriavidus sp. AnTP704 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS01770 and BWI76_RS01775 are separated by 105 nucleotides BWI76_RS01775 and BWI76_RS01780 are separated by 138 nucleotides
BWI76_RS01770: BWI76_RS01770 - transcriptional regulatory protein RtcR, at 361,143 to 362,723
_RS01770
BWI76_RS01775: BWI76_RS01775 - hypothetical protein, at 362,829 to 363,032
_RS01775
BWI76_RS01780: BWI76_RS01780 - SPFH domain / Band 7 family protein, at 363,171 to 364,298
_RS01780
Position (kb) 362
363
364 Strain fitness (log2 ratio) -2
-1
0
1 at 361.874 kb on - strand, within BWI76_RS01770 at 361.929 kb on - strand, within BWI76_RS01770 at 361.965 kb on - strand, within BWI76_RS01770 at 362.224 kb on - strand, within BWI76_RS01770 at 362.307 kb on - strand, within BWI76_RS01770 at 362.307 kb on - strand, within BWI76_RS01770 at 362.374 kb on - strand, within BWI76_RS01770 at 362.439 kb on + strand at 362.460 kb on - strand, within BWI76_RS01770 at 362.460 kb on - strand, within BWI76_RS01770 at 362.460 kb on - strand, within BWI76_RS01770 at 362.584 kb on + strand at 362.632 kb on - strand at 362.689 kb on - strand at 362.916 kb on - strand, within BWI76_RS01775 at 363.055 kb on - strand at 363.055 kb on - strand at 363.055 kb on - strand at 363.066 kb on + strand at 363.066 kb on + strand at 363.066 kb on + strand at 363.066 kb on + strand at 363.066 kb on + strand at 363.074 kb on - strand at 363.074 kb on - strand at 363.074 kb on - strand at 363.074 kb on - strand at 363.240 kb on - strand at 363.272 kb on + strand at 363.374 kb on + strand, within BWI76_RS01780 at 363.377 kb on - strand, within BWI76_RS01780 at 363.419 kb on - strand, within BWI76_RS01780 at 363.521 kb on + strand, within BWI76_RS01780 at 363.617 kb on + strand, within BWI76_RS01780 at 363.635 kb on + strand, within BWI76_RS01780 at 363.974 kb on + strand, within BWI76_RS01780 at 364.030 kb on + strand, within BWI76_RS01780
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Mixed culture; Cupriavidus sp. AnTP704 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x remove 361,874 - BWI76_RS01770 0.46 +0.2 361,929 - BWI76_RS01770 0.50 +1.7 361,965 - BWI76_RS01770 0.52 +0.4 362,224 - BWI76_RS01770 0.68 +0.6 362,307 - BWI76_RS01770 0.74 -0.3 362,307 - BWI76_RS01770 0.74 +0.3 362,374 - BWI76_RS01770 0.78 +0.2 362,439 + +0.6 362,460 - BWI76_RS01770 0.83 +0.7 362,460 - BWI76_RS01770 0.83 +0.1 362,460 - BWI76_RS01770 0.83 +0.4 362,584 + +0.5 362,632 - +0.7 362,689 - -0.1 362,916 - BWI76_RS01775 0.43 +0.8 363,055 - +0.6 363,055 - +1.2 363,055 - +0.4 363,066 + +1.1 363,066 + -0.4 363,066 + -2.6 363,066 + +0.2 363,066 + +0.3 363,074 - +0.1 363,074 - +0.6 363,074 - -1.4 363,074 - +0.3 363,240 - -0.0 363,272 + +1.2 363,374 + BWI76_RS01780 0.18 +0.2 363,377 - BWI76_RS01780 0.18 +1.2 363,419 - BWI76_RS01780 0.22 +0.6 363,521 + BWI76_RS01780 0.31 +0.4 363,617 + BWI76_RS01780 0.40 +0.4 363,635 + BWI76_RS01780 0.41 +1.1 363,974 + BWI76_RS01780 0.71 -1.5 364,030 + BWI76_RS01780 0.76 -0.4
Or see this region's nucleotide sequence