Experiment: RCH2_defined_noCarbon with Mixed culture; Cupriavidus sp. AnTP704 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS01020 and BWI76_RS01025 are separated by 3 nucleotides BWI76_RS01025 and BWI76_RS01030 overlap by 17 nucleotides BWI76_RS01030 and BWI76_RS01035 are separated by 18 nucleotides
BWI76_RS01020: BWI76_RS01020 - DNA helicase Rep, at 207,493 to 209,511
_RS01020
BWI76_RS01025: BWI76_RS01025 - hypothetical protein, at 209,515 to 210,477
_RS01025
BWI76_RS01030: BWI76_RS01030 - cytosine/purine, uracil, thiamine, allantoin permease family protein, at 210,461 to 211,876
_RS01030
BWI76_RS01035: BWI76_RS01035 - ADP-ribosylation/crystallin J1, at 211,895 to 212,911
_RS01035
Position (kb) 210
211
212 Strain fitness (log2 ratio) -1
0
1 at 209.478 kb on + strand at 209.635 kb on + strand, within BWI76_RS01025 at 209.705 kb on + strand, within BWI76_RS01025 at 209.713 kb on - strand, within BWI76_RS01025 at 209.829 kb on - strand, within BWI76_RS01025 at 209.848 kb on + strand, within BWI76_RS01025 at 209.865 kb on - strand, within BWI76_RS01025 at 209.865 kb on - strand, within BWI76_RS01025 at 209.865 kb on - strand, within BWI76_RS01025 at 210.021 kb on + strand, within BWI76_RS01025 at 210.031 kb on + strand, within BWI76_RS01025 at 210.034 kb on - strand, within BWI76_RS01025 at 210.065 kb on + strand, within BWI76_RS01025 at 210.128 kb on - strand, within BWI76_RS01025 at 210.128 kb on - strand, within BWI76_RS01025 at 210.462 kb on - strand at 210.549 kb on + strand at 210.649 kb on + strand, within BWI76_RS01030 at 210.652 kb on - strand, within BWI76_RS01030 at 210.662 kb on - strand, within BWI76_RS01030 at 210.677 kb on + strand, within BWI76_RS01030 at 210.757 kb on + strand, within BWI76_RS01030 at 211.104 kb on + strand, within BWI76_RS01030 at 211.256 kb on - strand, within BWI76_RS01030 at 211.441 kb on + strand, within BWI76_RS01030 at 211.482 kb on - strand, within BWI76_RS01030 at 211.626 kb on + strand, within BWI76_RS01030 at 211.856 kb on + strand at 211.886 kb on - strand at 211.990 kb on + strand at 212.493 kb on + strand, within BWI76_RS01035 at 212.568 kb on - strand, within BWI76_RS01035 at 212.690 kb on + strand, within BWI76_RS01035 at 212.699 kb on + strand, within BWI76_RS01035 at 212.703 kb on - strand, within BWI76_RS01035 at 212.707 kb on - strand, within BWI76_RS01035 at 212.815 kb on + strand at 212.815 kb on + strand at 212.823 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Mixed culture; Cupriavidus sp. AnTP704 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x remove 209,478 + -0.1 209,635 + BWI76_RS01025 0.12 +1.2 209,705 + BWI76_RS01025 0.20 -0.0 209,713 - BWI76_RS01025 0.21 -0.4 209,829 - BWI76_RS01025 0.33 +0.6 209,848 + BWI76_RS01025 0.35 -0.5 209,865 - BWI76_RS01025 0.36 +1.0 209,865 - BWI76_RS01025 0.36 +0.3 209,865 - BWI76_RS01025 0.36 -0.8 210,021 + BWI76_RS01025 0.53 +0.6 210,031 + BWI76_RS01025 0.54 +0.2 210,034 - BWI76_RS01025 0.54 -0.2 210,065 + BWI76_RS01025 0.57 -0.8 210,128 - BWI76_RS01025 0.64 +1.4 210,128 - BWI76_RS01025 0.64 +0.4 210,462 - +1.2 210,549 + -0.2 210,649 + BWI76_RS01030 0.13 +1.2 210,652 - BWI76_RS01030 0.13 -0.1 210,662 - BWI76_RS01030 0.14 +0.9 210,677 + BWI76_RS01030 0.15 +0.9 210,757 + BWI76_RS01030 0.21 +0.2 211,104 + BWI76_RS01030 0.45 -0.4 211,256 - BWI76_RS01030 0.56 +1.2 211,441 + BWI76_RS01030 0.69 +0.8 211,482 - BWI76_RS01030 0.72 +0.5 211,626 + BWI76_RS01030 0.82 +0.4 211,856 + +0.5 211,886 - +0.3 211,990 + +0.0 212,493 + BWI76_RS01035 0.59 +1.2 212,568 - BWI76_RS01035 0.66 -0.5 212,690 + BWI76_RS01035 0.78 -1.1 212,699 + BWI76_RS01035 0.79 +0.6 212,703 - BWI76_RS01035 0.79 -0.1 212,707 - BWI76_RS01035 0.80 +0.2 212,815 + +0.2 212,815 + -0.4 212,823 + +0.7
Or see this region's nucleotide sequence