Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS00640

Experiment: RCH2_defined_noCarbon with Mixed culture; Cupriavidus sp. AnTP704 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS00635 and BWI76_RS00640 are separated by 54 nucleotidesBWI76_RS00640 and BWI76_RS00645 overlap by 4 nucleotides BWI76_RS00635: BWI76_RS00635 - inulin fructotransferase (DFA-I-forming), at 129,269 to 130,633 _RS00635 BWI76_RS00640: BWI76_RS00640 - L-rhamnose mutarotase, at 130,688 to 131,002 _RS00640 BWI76_RS00645: BWI76_RS00645 - lactaldehyde reductase, at 130,999 to 132,147 _RS00645 Position (kb) 130 131 132Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 129.707 kb on + strand, within BWI76_RS00635at 129.712 kb on + strand, within BWI76_RS00635at 129.715 kb on - strand, within BWI76_RS00635at 129.715 kb on - strand, within BWI76_RS00635at 129.715 kb on - strand, within BWI76_RS00635at 129.731 kb on - strand, within BWI76_RS00635at 129.804 kb on + strand, within BWI76_RS00635at 129.804 kb on + strand, within BWI76_RS00635at 129.804 kb on + strand, within BWI76_RS00635at 129.812 kb on - strand, within BWI76_RS00635at 129.812 kb on - strand, within BWI76_RS00635at 129.812 kb on - strand, within BWI76_RS00635at 129.812 kb on - strandat 129.818 kb on + strand, within BWI76_RS00635at 129.819 kb on - strand, within BWI76_RS00635at 129.824 kb on + strand, within BWI76_RS00635at 129.824 kb on + strand, within BWI76_RS00635at 129.824 kb on + strand, within BWI76_RS00635at 129.824 kb on + strand, within BWI76_RS00635at 129.824 kb on + strand, within BWI76_RS00635at 129.824 kb on + strand, within BWI76_RS00635at 129.825 kb on + strand, within BWI76_RS00635at 129.826 kb on - strand, within BWI76_RS00635at 129.827 kb on - strand, within BWI76_RS00635at 129.827 kb on - strand, within BWI76_RS00635at 129.827 kb on - strand, within BWI76_RS00635at 129.828 kb on - strand, within BWI76_RS00635at 129.829 kb on + strand, within BWI76_RS00635at 129.829 kb on + strand, within BWI76_RS00635at 129.832 kb on - strand, within BWI76_RS00635at 129.832 kb on - strand, within BWI76_RS00635at 129.832 kb on - strand, within BWI76_RS00635at 129.832 kb on - strand, within BWI76_RS00635at 129.832 kb on - strand, within BWI76_RS00635at 129.832 kb on - strand, within BWI76_RS00635at 129.834 kb on + strand, within BWI76_RS00635at 129.837 kb on - strand, within BWI76_RS00635at 129.837 kb on - strand, within BWI76_RS00635at 129.837 kb on - strand, within BWI76_RS00635at 129.837 kb on - strand, within BWI76_RS00635at 129.840 kb on + strand, within BWI76_RS00635at 129.840 kb on + strand, within BWI76_RS00635at 129.840 kb on + strand, within BWI76_RS00635at 129.840 kb on + strand, within BWI76_RS00635at 129.842 kb on - strand, within BWI76_RS00635at 129.842 kb on - strand, within BWI76_RS00635at 129.846 kb on + strand, within BWI76_RS00635at 129.846 kb on + strand, within BWI76_RS00635at 129.848 kb on + strand, within BWI76_RS00635at 129.848 kb on - strand, within BWI76_RS00635at 129.848 kb on - strand, within BWI76_RS00635at 129.848 kb on - strand, within BWI76_RS00635at 129.848 kb on - strand, within BWI76_RS00635at 129.848 kb on - strand, within BWI76_RS00635at 129.848 kb on - strand, within BWI76_RS00635at 129.848 kb on - strand, within BWI76_RS00635at 129.848 kb on - strand, within BWI76_RS00635at 129.848 kb on - strand, within BWI76_RS00635at 129.848 kb on - strand, within BWI76_RS00635at 129.848 kb on - strand, within BWI76_RS00635at 129.854 kb on + strand, within BWI76_RS00635at 129.854 kb on - strand, within BWI76_RS00635at 129.854 kb on - strand, within BWI76_RS00635at 129.856 kb on + strand, within BWI76_RS00635at 129.859 kb on + strand, within BWI76_RS00635at 129.859 kb on + strand, within BWI76_RS00635at 129.862 kb on - strand, within BWI76_RS00635at 129.862 kb on - strand, within BWI76_RS00635at 129.867 kb on - strand, within BWI76_RS00635at 129.867 kb on - strandat 129.867 kb on - strand, within BWI76_RS00635at 129.904 kb on + strand, within BWI76_RS00635at 129.912 kb on + strand, within BWI76_RS00635at 129.912 kb on - strand, within BWI76_RS00635at 129.914 kb on + strand, within BWI76_RS00635at 129.914 kb on + strand, within BWI76_RS00635at 129.920 kb on - strand, within BWI76_RS00635at 129.920 kb on - strand, within BWI76_RS00635at 129.920 kb on - strand, within BWI76_RS00635at 129.922 kb on + strand, within BWI76_RS00635at 129.922 kb on + strand, within BWI76_RS00635at 129.922 kb on + strand, within BWI76_RS00635at 129.922 kb on - strand, within BWI76_RS00635at 129.922 kb on - strand, within BWI76_RS00635at 129.927 kb on + strand, within BWI76_RS00635at 129.927 kb on + strand, within BWI76_RS00635at 129.927 kb on + strand, within BWI76_RS00635at 129.927 kb on + strand, within BWI76_RS00635at 129.927 kb on + strand, within BWI76_RS00635at 129.927 kb on + strand, within BWI76_RS00635at 129.927 kb on + strand, within BWI76_RS00635at 129.927 kb on - strand, within BWI76_RS00635at 129.930 kb on - strand, within BWI76_RS00635at 129.935 kb on - strand, within BWI76_RS00635at 129.935 kb on - strand, within BWI76_RS00635at 129.969 kb on - strand, within BWI76_RS00635at 130.051 kb on - strand, within BWI76_RS00635at 130.056 kb on + strand, within BWI76_RS00635at 130.071 kb on + strandat 130.071 kb on + strand, within BWI76_RS00635at 130.073 kb on + strand, within BWI76_RS00635at 130.084 kb on - strand, within BWI76_RS00635at 130.111 kb on + strand, within BWI76_RS00635at 130.136 kb on + strand, within BWI76_RS00635at 130.144 kb on - strand, within BWI76_RS00635at 130.162 kb on - strand, within BWI76_RS00635at 130.185 kb on + strand, within BWI76_RS00635at 130.185 kb on + strand, within BWI76_RS00635at 130.185 kb on + strand, within BWI76_RS00635at 130.185 kb on + strand, within BWI76_RS00635at 130.185 kb on + strand, within BWI76_RS00635at 130.187 kb on + strand, within BWI76_RS00635at 130.187 kb on + strand, within BWI76_RS00635at 130.187 kb on + strand, within BWI76_RS00635at 130.195 kb on - strand, within BWI76_RS00635at 130.210 kb on + strand, within BWI76_RS00635at 130.219 kb on - strand, within BWI76_RS00635at 130.228 kb on + strand, within BWI76_RS00635at 130.236 kb on + strand, within BWI76_RS00635at 130.236 kb on + strand, within BWI76_RS00635at 130.236 kb on + strand, within BWI76_RS00635at 130.236 kb on + strand, within BWI76_RS00635at 130.236 kb on + strand, within BWI76_RS00635at 130.236 kb on - strand, within BWI76_RS00635at 130.237 kb on - strand, within BWI76_RS00635at 130.243 kb on - strand, within BWI76_RS00635at 130.246 kb on + strand, within BWI76_RS00635at 130.251 kb on + strandat 130.254 kb on - strand, within BWI76_RS00635at 130.254 kb on - strand, within BWI76_RS00635at 130.254 kb on - strand, within BWI76_RS00635at 130.307 kb on - strand, within BWI76_RS00635at 130.317 kb on - strandat 130.329 kb on + strand, within BWI76_RS00635at 130.329 kb on + strand, within BWI76_RS00635at 130.329 kb on + strand, within BWI76_RS00635at 130.329 kb on + strand, within BWI76_RS00635at 130.337 kb on - strand, within BWI76_RS00635at 130.337 kb on - strand, within BWI76_RS00635at 130.337 kb on - strand, within BWI76_RS00635at 130.403 kb on + strand, within BWI76_RS00635at 130.462 kb on + strand, within BWI76_RS00635at 130.462 kb on + strand, within BWI76_RS00635at 130.462 kb on + strand, within BWI76_RS00635at 130.465 kb on - strand, within BWI76_RS00635at 130.470 kb on - strand, within BWI76_RS00635at 130.488 kb on + strand, within BWI76_RS00635at 130.488 kb on + strand, within BWI76_RS00635at 130.488 kb on + strand, within BWI76_RS00635at 130.497 kb on + strandat 130.525 kb on + strandat 130.585 kb on - strandat 130.599 kb on + strandat 130.661 kb on + strandat 130.707 kb on + strandat 130.733 kb on - strand, within BWI76_RS00640at 130.842 kb on - strand, within BWI76_RS00640at 131.161 kb on - strand, within BWI76_RS00645at 131.192 kb on - strand, within BWI76_RS00645at 131.386 kb on + strand, within BWI76_RS00645at 131.386 kb on + strand, within BWI76_RS00645at 131.394 kb on - strand, within BWI76_RS00645at 131.512 kb on - strand, within BWI76_RS00645at 131.555 kb on - strand, within BWI76_RS00645at 131.563 kb on - strand, within BWI76_RS00645at 131.674 kb on + strand, within BWI76_RS00645at 131.792 kb on - strand, within BWI76_RS00645at 131.945 kb on - strand, within BWI76_RS00645

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Per-strain Table

Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Mixed culture; Cupriavidus sp. AnTP704 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x
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129,707 + BWI76_RS00635 0.32 -0.5
129,712 + BWI76_RS00635 0.32 +0.5
129,715 - BWI76_RS00635 0.33 +0.4
129,715 - BWI76_RS00635 0.33 +0.2
129,715 - BWI76_RS00635 0.33 -0.0
129,731 - BWI76_RS00635 0.34 +0.3
129,804 + BWI76_RS00635 0.39 +3.2
129,804 + BWI76_RS00635 0.39 -0.8
129,804 + BWI76_RS00635 0.39 -0.7
129,812 - BWI76_RS00635 0.40 -1.4
129,812 - BWI76_RS00635 0.40 +0.1
129,812 - BWI76_RS00635 0.40 -1.4
129,812 - -0.4
129,818 + BWI76_RS00635 0.40 +0.2
129,819 - BWI76_RS00635 0.40 +1.0
129,824 + BWI76_RS00635 0.41 +0.1
129,824 + BWI76_RS00635 0.41 +0.6
129,824 + BWI76_RS00635 0.41 -0.7
129,824 + BWI76_RS00635 0.41 +0.1
129,824 + BWI76_RS00635 0.41 +0.1
129,824 + BWI76_RS00635 0.41 -0.2
129,825 + BWI76_RS00635 0.41 +1.3
129,826 - BWI76_RS00635 0.41 -0.1
129,827 - BWI76_RS00635 0.41 +0.1
129,827 - BWI76_RS00635 0.41 +0.7
129,827 - BWI76_RS00635 0.41 -0.9
129,828 - BWI76_RS00635 0.41 -0.5
129,829 + BWI76_RS00635 0.41 +0.2
129,829 + BWI76_RS00635 0.41 +1.2
129,832 - BWI76_RS00635 0.41 -0.2
129,832 - BWI76_RS00635 0.41 -0.7
129,832 - BWI76_RS00635 0.41 +1.4
129,832 - BWI76_RS00635 0.41 +0.2
129,832 - BWI76_RS00635 0.41 +0.6
129,832 - BWI76_RS00635 0.41 -1.4
129,834 + BWI76_RS00635 0.41 -0.1
129,837 - BWI76_RS00635 0.42 +0.1
129,837 - BWI76_RS00635 0.42 -0.2
129,837 - BWI76_RS00635 0.42 +0.3
129,837 - BWI76_RS00635 0.42 +0.5
129,840 + BWI76_RS00635 0.42 -0.2
129,840 + BWI76_RS00635 0.42 -0.4
129,840 + BWI76_RS00635 0.42 -0.6
129,840 + BWI76_RS00635 0.42 -2.0
129,842 - BWI76_RS00635 0.42 +0.7
129,842 - BWI76_RS00635 0.42 +0.8
129,846 + BWI76_RS00635 0.42 +0.5
129,846 + BWI76_RS00635 0.42 +0.7
129,848 + BWI76_RS00635 0.42 +0.4
129,848 - BWI76_RS00635 0.42 -2.6
129,848 - BWI76_RS00635 0.42 +0.5
129,848 - BWI76_RS00635 0.42 +0.4
129,848 - BWI76_RS00635 0.42 +1.2
129,848 - BWI76_RS00635 0.42 +0.3
129,848 - BWI76_RS00635 0.42 -0.4
129,848 - BWI76_RS00635 0.42 -0.3
129,848 - BWI76_RS00635 0.42 -0.6
129,848 - BWI76_RS00635 0.42 -1.8
129,848 - BWI76_RS00635 0.42 -0.2
129,848 - BWI76_RS00635 0.42 -0.6
129,854 + BWI76_RS00635 0.43 -2.3
129,854 - BWI76_RS00635 0.43 -0.2
129,854 - BWI76_RS00635 0.43 +0.3
129,856 + BWI76_RS00635 0.43 +0.1
129,859 + BWI76_RS00635 0.43 +0.0
129,859 + BWI76_RS00635 0.43 +0.2
129,862 - BWI76_RS00635 0.43 +1.2
129,862 - BWI76_RS00635 0.43 +0.4
129,867 - BWI76_RS00635 0.44 +0.4
129,867 - +1.2
129,867 - BWI76_RS00635 0.44 -2.3
129,904 + BWI76_RS00635 0.47 -0.4
129,912 + BWI76_RS00635 0.47 -0.6
129,912 - BWI76_RS00635 0.47 +0.8
129,914 + BWI76_RS00635 0.47 +1.1
129,914 + BWI76_RS00635 0.47 -0.1
129,920 - BWI76_RS00635 0.48 -0.1
129,920 - BWI76_RS00635 0.48 +1.6
129,920 - BWI76_RS00635 0.48 +0.5
129,922 + BWI76_RS00635 0.48 -1.1
129,922 + BWI76_RS00635 0.48 -1.4
129,922 + BWI76_RS00635 0.48 +0.8
129,922 - BWI76_RS00635 0.48 +0.3
129,922 - BWI76_RS00635 0.48 +0.4
129,927 + BWI76_RS00635 0.48 +0.5
129,927 + BWI76_RS00635 0.48 -0.3
129,927 + BWI76_RS00635 0.48 -2.0
129,927 + BWI76_RS00635 0.48 -0.1
129,927 + BWI76_RS00635 0.48 +1.2
129,927 + BWI76_RS00635 0.48 -0.8
129,927 + BWI76_RS00635 0.48 +0.7
129,927 - BWI76_RS00635 0.48 +0.1
129,930 - BWI76_RS00635 0.48 -0.4
129,935 - BWI76_RS00635 0.49 -0.1
129,935 - BWI76_RS00635 0.49 -0.3
129,969 - BWI76_RS00635 0.51 +1.8
130,051 - BWI76_RS00635 0.57 -0.9
130,056 + BWI76_RS00635 0.58 -0.1
130,071 + +1.2
130,071 + BWI76_RS00635 0.59 +0.2
130,073 + BWI76_RS00635 0.59 +0.1
130,084 - BWI76_RS00635 0.60 -0.4
130,111 + BWI76_RS00635 0.62 +0.1
130,136 + BWI76_RS00635 0.64 +0.4
130,144 - BWI76_RS00635 0.64 -0.8
130,162 - BWI76_RS00635 0.65 -0.8
130,185 + BWI76_RS00635 0.67 -0.1
130,185 + BWI76_RS00635 0.67 +1.2
130,185 + BWI76_RS00635 0.67 -0.4
130,185 + BWI76_RS00635 0.67 -0.1
130,185 + BWI76_RS00635 0.67 +3.5
130,187 + BWI76_RS00635 0.67 -0.6
130,187 + BWI76_RS00635 0.67 +0.2
130,187 + BWI76_RS00635 0.67 +0.1
130,195 - BWI76_RS00635 0.68 +0.4
130,210 + BWI76_RS00635 0.69 -0.1
130,219 - BWI76_RS00635 0.70 -0.4
130,228 + BWI76_RS00635 0.70 -0.2
130,236 + BWI76_RS00635 0.71 +0.1
130,236 + BWI76_RS00635 0.71 -3.6
130,236 + BWI76_RS00635 0.71 -0.2
130,236 + BWI76_RS00635 0.71 +0.2
130,236 + BWI76_RS00635 0.71 -0.2
130,236 - BWI76_RS00635 0.71 +0.3
130,237 - BWI76_RS00635 0.71 +0.1
130,243 - BWI76_RS00635 0.71 -0.0
130,246 + BWI76_RS00635 0.72 +0.8
130,251 + +1.8
130,254 - BWI76_RS00635 0.72 -0.0
130,254 - BWI76_RS00635 0.72 -0.1
130,254 - BWI76_RS00635 0.72 -0.1
130,307 - BWI76_RS00635 0.76 -0.1
130,317 - -0.8
130,329 + BWI76_RS00635 0.78 +0.9
130,329 + BWI76_RS00635 0.78 +0.2
130,329 + BWI76_RS00635 0.78 -2.0
130,329 + BWI76_RS00635 0.78 -0.2
130,337 - BWI76_RS00635 0.78 +0.5
130,337 - BWI76_RS00635 0.78 +0.8
130,337 - BWI76_RS00635 0.78 +0.7
130,403 + BWI76_RS00635 0.83 +0.9
130,462 + BWI76_RS00635 0.87 +0.7
130,462 + BWI76_RS00635 0.87 +1.8
130,462 + BWI76_RS00635 0.87 +0.1
130,465 - BWI76_RS00635 0.88 -0.7
130,470 - BWI76_RS00635 0.88 -0.4
130,488 + BWI76_RS00635 0.89 +0.9
130,488 + BWI76_RS00635 0.89 +0.3
130,488 + BWI76_RS00635 0.89 -1.1
130,497 + -0.2
130,525 + +0.4
130,585 - +0.5
130,599 + +1.2
130,661 + +0.1
130,707 + +1.0
130,733 - BWI76_RS00640 0.14 +0.3
130,842 - BWI76_RS00640 0.49 +1.0
131,161 - BWI76_RS00645 0.14 +0.2
131,192 - BWI76_RS00645 0.17 -0.2
131,386 + BWI76_RS00645 0.34 +0.1
131,386 + BWI76_RS00645 0.34 +0.3
131,394 - BWI76_RS00645 0.34 -0.5
131,512 - BWI76_RS00645 0.45 +0.2
131,555 - BWI76_RS00645 0.48 +0.6
131,563 - BWI76_RS00645 0.49 -0.1
131,674 + BWI76_RS00645 0.59 +1.0
131,792 - BWI76_RS00645 0.69 +0.5
131,945 - BWI76_RS00645 0.82 -0.9

Or see this region's nucleotide sequence