Experiment: MoYLS4 with Ammonium Persulfate 2.5mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt gmhA and DORF38058 are separated by 20 nucleotides DORF38058 and hemC are separated by 36 nucleotides hemC and DVU1891 are separated by 342 nucleotides
DVU1889: gmhA - phosphoheptose isomerase (TIGR), at 1,961,468 to 1,962,094
gmhA
DORF38058: DORF38058 - SEED: FIG00604017: hypothetical protein, at 1,962,115 to 1,962,372
DORF38058
DVU1890: hemC - porphobilinogen deaminase (TIGR), at 1,962,409 to 1,963,356
hemC
DVU1891: DVU1891 - conserved hypothetical protein (TIGR), at 1,963,699 to 1,964,460
DVU1891
Position (kb)
1962
1963
1964 Strain fitness (log2 ratio)
-1
0
1 at 1961.422 kb on + strand at 1961.430 kb on - strand at 1962.332 kb on + strand, within DORF38058 at 1963.426 kb on - strand at 1963.490 kb on + strand at 1963.543 kb on + strand at 1963.576 kb on + strand at 1963.605 kb on + strand at 1963.666 kb on - strand at 1963.666 kb on - strand at 1963.678 kb on - strand at 1963.691 kb on + strand at 1963.696 kb on + strand at 1963.848 kb on + strand, within DVU1891 at 1963.889 kb on + strand, within DVU1891 at 1963.889 kb on + strand, within DVU1891 at 1963.897 kb on - strand, within DVU1891 at 1963.976 kb on - strand, within DVU1891 at 1963.989 kb on + strand, within DVU1891 at 1964.149 kb on + strand, within DVU1891 at 1964.183 kb on + strand, within DVU1891 at 1964.279 kb on - strand, within DVU1891 at 1964.285 kb on - strand, within DVU1891
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Ammonium Persulfate 2.5mM remove 1,961,422 + +0.0 1,961,430 - -0.0 1,962,332 + DORF38058 0.84 -1.6 1,963,426 - +0.1 1,963,490 + -0.2 1,963,543 + +0.6 1,963,576 + -0.0 1,963,605 + -0.1 1,963,666 - +0.8 1,963,666 - -0.1 1,963,678 - +0.3 1,963,691 + -0.5 1,963,696 + +0.4 1,963,848 + DVU1891 0.20 -0.2 1,963,889 + DVU1891 0.25 -1.1 1,963,889 + DVU1891 0.25 -0.4 1,963,897 - DVU1891 0.26 -0.2 1,963,976 - DVU1891 0.36 -0.5 1,963,989 + DVU1891 0.38 +0.2 1,964,149 + DVU1891 0.59 -1.5 1,964,183 + DVU1891 0.64 +0.5 1,964,279 - DVU1891 0.76 -0.5 1,964,285 - DVU1891 0.77 -1.4
Or see this region's nucleotide sequence