Experiment: Lactulose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc03832 and SMc03833 are separated by 551 nucleotides SMc03833 and SMc03834 are separated by 131 nucleotides SMc03834 and SMc03835 are separated by 130 nucleotides
SMc03832: SMc03832 - signal peptide protein, at 3,499,149 to 3,499,652
SMc03832
SMc03833: SMc03833 - hypothetical protein, at 3,500,204 to 3,500,581
SMc03833
SMc03834: SMc03834 - pterin-4-alpha-carbinolamine dehydratase, at 3,500,713 to 3,501,027
SMc03834
SMc03835: SMc03835 - 2'-5' RNA ligase, at 3,501,158 to 3,501,745
SMc03835
Position (kb)
3500
3501 Strain fitness (log2 ratio)
-2
-1
0
1 at 3499.740 kb on - strand at 3499.875 kb on - strand at 3499.936 kb on - strand at 3499.955 kb on - strand at 3500.040 kb on - strand at 3500.040 kb on - strand at 3500.154 kb on + strand at 3500.154 kb on + strand at 3500.154 kb on + strand at 3500.166 kb on - strand at 3500.191 kb on + strand at 3500.192 kb on - strand at 3500.430 kb on + strand, within SMc03833 at 3500.433 kb on + strand, within SMc03833 at 3500.433 kb on + strand, within SMc03833 at 3500.607 kb on - strand at 3500.621 kb on + strand at 3500.621 kb on + strand at 3500.622 kb on - strand at 3500.683 kb on + strand at 3500.684 kb on - strand at 3500.691 kb on - strand at 3500.714 kb on + strand at 3500.714 kb on + strand at 3500.714 kb on + strand at 3500.714 kb on + strand at 3500.715 kb on - strand at 3500.715 kb on - strand at 3500.715 kb on - strand at 3500.715 kb on - strand at 3500.715 kb on - strand at 3500.715 kb on - strand at 3500.715 kb on - strand at 3500.718 kb on + strand at 3500.718 kb on + strand at 3500.718 kb on + strand at 3500.718 kb on + strand at 3500.719 kb on - strand at 3500.719 kb on - strand at 3500.719 kb on - strand at 3500.938 kb on + strand, within SMc03834 at 3501.056 kb on + strand at 3501.056 kb on + strand at 3501.243 kb on + strand, within SMc03835 at 3501.244 kb on - strand, within SMc03835 at 3501.422 kb on + strand, within SMc03835 at 3501.422 kb on + strand, within SMc03835
Per-strain Table
Position Strand Gene LocusTag Fraction Lactulose (C) remove 3,499,740 - +0.0 3,499,875 - -0.2 3,499,936 - -0.1 3,499,955 - -0.1 3,500,040 - -0.1 3,500,040 - +0.2 3,500,154 + +0.4 3,500,154 + -0.6 3,500,154 + -0.3 3,500,166 - -0.1 3,500,191 + +1.1 3,500,192 - +0.0 3,500,430 + SMc03833 0.60 -0.7 3,500,433 + SMc03833 0.61 -0.6 3,500,433 + SMc03833 0.61 -0.8 3,500,607 - +1.5 3,500,621 + +1.1 3,500,621 + -0.1 3,500,622 - -0.3 3,500,683 + +0.4 3,500,684 - -0.1 3,500,691 - +0.9 3,500,714 + -0.9 3,500,714 + +0.3 3,500,714 + +0.2 3,500,714 + +0.3 3,500,715 - -0.7 3,500,715 - -1.9 3,500,715 - -1.7 3,500,715 - -0.4 3,500,715 - -0.0 3,500,715 - -0.5 3,500,715 - -0.2 3,500,718 + +0.1 3,500,718 + -0.1 3,500,718 + +0.3 3,500,718 + -0.5 3,500,719 - +0.2 3,500,719 - +0.5 3,500,719 - +0.2 3,500,938 + SMc03834 0.71 +0.1 3,501,056 + +0.1 3,501,056 + +0.2 3,501,243 + SMc03835 0.14 +0.4 3,501,244 - SMc03835 0.15 -1.2 3,501,422 + SMc03835 0.45 -1.3 3,501,422 + SMc03835 0.45 -0.5
Or see this region's nucleotide sequence