Strain Fitness in Sinorhizobium meliloti 1021 around SMc03833

Experiment: Lactulose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc03832 and SMc03833 are separated by 551 nucleotidesSMc03833 and SMc03834 are separated by 131 nucleotidesSMc03834 and SMc03835 are separated by 130 nucleotides SMc03832: SMc03832 - signal peptide protein, at 3,499,149 to 3,499,652 SMc03832 SMc03833: SMc03833 - hypothetical protein, at 3,500,204 to 3,500,581 SMc03833 SMc03834: SMc03834 - pterin-4-alpha-carbinolamine dehydratase, at 3,500,713 to 3,501,027 SMc03834 SMc03835: SMc03835 - 2'-5' RNA ligase, at 3,501,158 to 3,501,745 SMc03835 Position (kb) 3500 3501Strain fitness (log2 ratio) -2 -1 0 1at 3499.740 kb on - strandat 3499.875 kb on - strandat 3499.936 kb on - strandat 3499.955 kb on - strandat 3500.040 kb on - strandat 3500.040 kb on - strandat 3500.154 kb on + strandat 3500.154 kb on + strandat 3500.154 kb on + strandat 3500.166 kb on - strandat 3500.191 kb on + strandat 3500.192 kb on - strandat 3500.430 kb on + strand, within SMc03833at 3500.433 kb on + strand, within SMc03833at 3500.433 kb on + strand, within SMc03833at 3500.607 kb on - strandat 3500.621 kb on + strandat 3500.621 kb on + strandat 3500.622 kb on - strandat 3500.683 kb on + strandat 3500.684 kb on - strandat 3500.691 kb on - strandat 3500.714 kb on + strandat 3500.714 kb on + strandat 3500.714 kb on + strandat 3500.714 kb on + strandat 3500.715 kb on - strandat 3500.715 kb on - strandat 3500.715 kb on - strandat 3500.715 kb on - strandat 3500.715 kb on - strandat 3500.715 kb on - strandat 3500.715 kb on - strandat 3500.718 kb on + strandat 3500.718 kb on + strandat 3500.718 kb on + strandat 3500.718 kb on + strandat 3500.719 kb on - strandat 3500.719 kb on - strandat 3500.719 kb on - strandat 3500.938 kb on + strand, within SMc03834at 3501.056 kb on + strandat 3501.056 kb on + strandat 3501.243 kb on + strand, within SMc03835at 3501.244 kb on - strand, within SMc03835at 3501.422 kb on + strand, within SMc03835at 3501.422 kb on + strand, within SMc03835

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Per-strain Table

Position Strand Gene LocusTag Fraction Lactulose (C)
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3,499,740 - +0.0
3,499,875 - -0.2
3,499,936 - -0.1
3,499,955 - -0.1
3,500,040 - -0.1
3,500,040 - +0.2
3,500,154 + +0.4
3,500,154 + -0.6
3,500,154 + -0.3
3,500,166 - -0.1
3,500,191 + +1.1
3,500,192 - +0.0
3,500,430 + SMc03833 0.60 -0.7
3,500,433 + SMc03833 0.61 -0.6
3,500,433 + SMc03833 0.61 -0.8
3,500,607 - +1.5
3,500,621 + +1.1
3,500,621 + -0.1
3,500,622 - -0.3
3,500,683 + +0.4
3,500,684 - -0.1
3,500,691 - +0.9
3,500,714 + -0.9
3,500,714 + +0.3
3,500,714 + +0.2
3,500,714 + +0.3
3,500,715 - -0.7
3,500,715 - -1.9
3,500,715 - -1.7
3,500,715 - -0.4
3,500,715 - -0.0
3,500,715 - -0.5
3,500,715 - -0.2
3,500,718 + +0.1
3,500,718 + -0.1
3,500,718 + +0.3
3,500,718 + -0.5
3,500,719 - +0.2
3,500,719 - +0.5
3,500,719 - +0.2
3,500,938 + SMc03834 0.71 +0.1
3,501,056 + +0.1
3,501,056 + +0.2
3,501,243 + SMc03835 0.14 +0.4
3,501,244 - SMc03835 0.15 -1.2
3,501,422 + SMc03835 0.45 -1.3
3,501,422 + SMc03835 0.45 -0.5

Or see this region's nucleotide sequence