Experiment: Lactulose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02618 and SMc02619 are separated by 8 nucleotides SMc02619 and SMc02620 are separated by 304 nucleotides SMc02620 and SMc04154 are separated by 203 nucleotides
SMc02618: SMc02618 - hypothetical protein, at 110,788 to 111,171
SMc02618
SMc02619: SMc02619 - hypothetical protein, at 111,180 to 111,497
SMc02619
SMc02620: SMc02620 - hypothetical protein, at 111,802 to 112,533
SMc02620
SMc04154: SMc04154 - formyltetrahydrofolate deformylase, at 112,737 to 113,627
SMc04154
Position (kb) 111
112
113 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 111.075 kb on - strand, within SMc02618 at 111.075 kb on - strand, within SMc02618 at 111.082 kb on + strand, within SMc02618 at 111.083 kb on - strand, within SMc02618 at 111.086 kb on + strand, within SMc02618 at 111.086 kb on + strand, within SMc02618 at 111.086 kb on + strand, within SMc02618 at 111.086 kb on + strand, within SMc02618 at 111.087 kb on - strand, within SMc02618 at 111.087 kb on - strand, within SMc02618 at 111.087 kb on - strand, within SMc02618 at 111.164 kb on + strand at 111.164 kb on + strand at 111.165 kb on - strand at 111.174 kb on + strand at 111.175 kb on - strand at 111.175 kb on - strand at 111.175 kb on - strand at 111.175 kb on - strand at 111.175 kb on - strand at 111.230 kb on - strand, within SMc02619 at 111.254 kb on - strand, within SMc02619 at 111.350 kb on - strand, within SMc02619 at 111.410 kb on + strand, within SMc02619 at 111.410 kb on + strand, within SMc02619 at 111.447 kb on - strand, within SMc02619 at 111.483 kb on + strand at 111.483 kb on + strand at 111.483 kb on + strand at 111.483 kb on + strand at 111.484 kb on - strand at 111.549 kb on - strand at 111.668 kb on - strand at 111.684 kb on + strand at 111.709 kb on + strand at 111.723 kb on + strand at 111.724 kb on - strand at 111.745 kb on + strand at 111.745 kb on + strand at 111.746 kb on - strand at 111.746 kb on - strand at 111.746 kb on - strand at 111.746 kb on - strand at 111.746 kb on - strand at 111.772 kb on + strand at 112.167 kb on + strand, within SMc02620 at 112.167 kb on + strand, within SMc02620 at 112.167 kb on + strand, within SMc02620 at 112.168 kb on - strand, within SMc02620 at 112.168 kb on - strand, within SMc02620 at 112.237 kb on + strand, within SMc02620 at 112.237 kb on + strand, within SMc02620 at 112.237 kb on + strand, within SMc02620 at 112.238 kb on - strand, within SMc02620 at 112.238 kb on - strand, within SMc02620 at 112.238 kb on - strand, within SMc02620 at 112.291 kb on + strand, within SMc02620 at 112.292 kb on - strand, within SMc02620 at 112.292 kb on - strand, within SMc02620 at 112.360 kb on + strand, within SMc02620 at 112.360 kb on + strand, within SMc02620 at 112.360 kb on + strand, within SMc02620 at 112.361 kb on - strand, within SMc02620 at 112.361 kb on - strand, within SMc02620 at 112.361 kb on - strand, within SMc02620 at 112.406 kb on - strand, within SMc02620 at 112.490 kb on - strand at 112.789 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Lactulose (C) remove 111,075 - SMc02618 0.75 +0.3 111,075 - SMc02618 0.75 +1.1 111,082 + SMc02618 0.77 +0.8 111,083 - SMc02618 0.77 -0.9 111,086 + SMc02618 0.78 +1.5 111,086 + SMc02618 0.78 -1.3 111,086 + SMc02618 0.78 +0.7 111,086 + SMc02618 0.78 -0.9 111,087 - SMc02618 0.78 +0.5 111,087 - SMc02618 0.78 +0.1 111,087 - SMc02618 0.78 -0.6 111,164 + -0.6 111,164 + +0.1 111,165 - -0.8 111,174 + +0.5 111,175 - +1.2 111,175 - -0.2 111,175 - +1.1 111,175 - +0.2 111,175 - -0.5 111,230 - SMc02619 0.16 +0.5 111,254 - SMc02619 0.23 -0.2 111,350 - SMc02619 0.53 +0.3 111,410 + SMc02619 0.72 -0.0 111,410 + SMc02619 0.72 +0.6 111,447 - SMc02619 0.84 +0.1 111,483 + +0.4 111,483 + +0.4 111,483 + -0.7 111,483 + +0.1 111,484 - +0.8 111,549 - -0.3 111,668 - -0.4 111,684 + -0.2 111,709 + +1.2 111,723 + -0.0 111,724 - -0.5 111,745 + +1.3 111,745 + +0.1 111,746 - -0.4 111,746 - -0.2 111,746 - +0.5 111,746 - -1.4 111,746 - -2.9 111,772 + +0.1 112,167 + SMc02620 0.50 -1.4 112,167 + SMc02620 0.50 -0.2 112,167 + SMc02620 0.50 -0.4 112,168 - SMc02620 0.50 -1.0 112,168 - SMc02620 0.50 -1.3 112,237 + SMc02620 0.59 -0.4 112,237 + SMc02620 0.59 -0.8 112,237 + SMc02620 0.59 -1.9 112,238 - SMc02620 0.60 -0.4 112,238 - SMc02620 0.60 -1.0 112,238 - SMc02620 0.60 +0.4 112,291 + SMc02620 0.67 -0.9 112,292 - SMc02620 0.67 -1.0 112,292 - SMc02620 0.67 -1.8 112,360 + SMc02620 0.76 -0.1 112,360 + SMc02620 0.76 -1.9 112,360 + SMc02620 0.76 -0.9 112,361 - SMc02620 0.76 -0.5 112,361 - SMc02620 0.76 -1.4 112,361 - SMc02620 0.76 -1.8 112,406 - SMc02620 0.83 +0.7 112,490 - -1.4 112,789 + +0.4
Or see this region's nucleotide sequence