Experiment: Lactulose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc01727 and SMc01726 are separated by 194 nucleotides SMc01726 and SMc01725 are separated by 289 nucleotides
SMc01727: SMc01727 - hypothetical protein, at 475,278 to 476,048
SMc01727
SMc01726: SMc01726 - acetylglutamate kinase, at 476,243 to 477,130
SMc01726
SMc01725: SMc01725 - hypothetical protein, at 477,420 to 478,133
SMc01725
Position (kb) 476
477
478 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1 at 475.275 kb on - strand at 475.275 kb on - strand at 475.275 kb on - strand at 475.345 kb on - strand at 475.542 kb on + strand, within SMc01727 at 475.813 kb on - strand, within SMc01727 at 475.910 kb on - strand, within SMc01727 at 475.910 kb on - strand, within SMc01727 at 475.910 kb on - strand, within SMc01727 at 475.975 kb on - strand at 476.034 kb on + strand at 476.122 kb on + strand at 476.188 kb on + strand at 476.188 kb on + strand at 476.189 kb on - strand at 476.556 kb on + strand, within SMc01726 at 476.557 kb on - strand, within SMc01726 at 476.557 kb on - strand, within SMc01726 at 476.557 kb on - strand, within SMc01726 at 477.076 kb on - strand at 477.076 kb on - strand at 477.203 kb on + strand at 477.204 kb on - strand at 477.480 kb on + strand at 477.480 kb on + strand at 477.481 kb on - strand at 477.481 kb on - strand at 477.481 kb on - strand at 477.481 kb on - strand at 477.481 kb on - strand at 477.603 kb on + strand, within SMc01725 at 477.604 kb on - strand, within SMc01725 at 477.730 kb on + strand, within SMc01725 at 477.797 kb on + strand, within SMc01725
Per-strain Table
Position Strand Gene LocusTag Fraction Lactulose (C) remove 475,275 - -0.5 475,275 - -0.4 475,275 - +0.1 475,345 - +0.0 475,542 + SMc01727 0.34 -0.3 475,813 - SMc01727 0.69 -1.2 475,910 - SMc01727 0.82 -0.1 475,910 - SMc01727 0.82 -0.0 475,910 - SMc01727 0.82 +0.0 475,975 - -1.0 476,034 + -0.4 476,122 + +1.2 476,188 + +0.1 476,188 + -0.3 476,189 - +0.8 476,556 + SMc01726 0.35 -5.9 476,557 - SMc01726 0.35 -3.8 476,557 - SMc01726 0.35 -4.4 476,557 - SMc01726 0.35 -1.9 477,076 - -1.3 477,076 - -3.6 477,203 + +0.0 477,204 - -1.7 477,480 + -1.1 477,480 + -0.2 477,481 - -0.3 477,481 - -0.2 477,481 - +0.3 477,481 - +0.1 477,481 - +1.3 477,603 + SMc01725 0.26 +0.1 477,604 - SMc01725 0.26 -0.4 477,730 + SMc01725 0.43 +0.4 477,797 + SMc01725 0.53 -0.3
Or see this region's nucleotide sequence