Experiment: Lactulose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc01451 and SMc01452 are separated by 82 nucleotides SMc01452 and SMc01453 are separated by 476 nucleotides SMc01453 and SMc01454 are separated by 314 nucleotides
SMc01451: SMc01451 - hypothetical protein, at 2,292,203 to 2,292,418
SMc01451
SMc01452: SMc01452 - hypothetical protein, at 2,292,501 to 2,292,743
SMc01452
SMc01453: SMc01453 - transposase, at 2,293,220 to 2,294,383
SMc01453
SMc01454: SMc01454 - hypothetical protein, at 2,294,698 to 2,298,402
SMc01454
Position (kb)
2293
2294
2295 Strain fitness (log2 ratio)
-1
0
1
2
3
4 at 2292.685 kb on + strand, within SMc01452 at 2292.686 kb on - strand, within SMc01452 at 2292.693 kb on + strand, within SMc01452 at 2292.693 kb on + strand, within SMc01452 at 2292.693 kb on + strand, within SMc01452 at 2292.694 kb on - strand, within SMc01452 at 2292.741 kb on + strand at 2292.742 kb on - strand at 2292.742 kb on - strand at 2292.794 kb on - strand at 2292.928 kb on - strand at 2292.928 kb on - strand at 2292.928 kb on - strand at 2292.928 kb on - strand at 2293.029 kb on + strand at 2293.029 kb on + strand at 2293.029 kb on + strand at 2294.375 kb on + strand at 2294.622 kb on + strand at 2294.622 kb on + strand at 2294.622 kb on + strand at 2294.622 kb on + strand at 2294.622 kb on + strand at 2294.700 kb on - strand at 2294.709 kb on + strand at 2294.709 kb on + strand at 2295.056 kb on - strand at 2295.335 kb on - strand, within SMc01454
Per-strain Table
Position Strand Gene LocusTag Fraction Lactulose (C) remove 2,292,685 + SMc01452 0.76 -0.4 2,292,686 - SMc01452 0.76 -0.1 2,292,693 + SMc01452 0.79 -0.5 2,292,693 + SMc01452 0.79 -0.1 2,292,693 + SMc01452 0.79 -0.8 2,292,694 - SMc01452 0.79 -0.5 2,292,741 + -0.1 2,292,742 - -0.3 2,292,742 - +1.0 2,292,794 - +0.3 2,292,928 - -0.0 2,292,928 - -0.6 2,292,928 - -0.1 2,292,928 - -0.5 2,293,029 + -1.2 2,293,029 + +0.0 2,293,029 + -0.7 2,294,375 + -0.4 2,294,622 + +3.2 2,294,622 + -0.2 2,294,622 + -0.8 2,294,622 + -0.1 2,294,622 + +3.9 2,294,700 - +0.5 2,294,709 + +0.2 2,294,709 + -0.2 2,295,056 - -0.9 2,295,335 - SMc01454 0.17 -1.2
Or see this region's nucleotide sequence