Experiment: Lactulose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00888 and SMc00887 overlap by 4 nucleotides SMc00887 and SMc00929 overlap by 25 nucleotides
SMc00888: SMc00888 - 2-component receiver domain-containing protein, at 895,248 to 896,984
SMc00888
SMc00887: SMc00887 - hypothetical protein, at 896,981 to 898,327
SMc00887
SMc00929: SMc00929 - transcriptional regulator, at 898,303 to 899,283
SMc00929
Position (kb) 896
897
898
899 Strain fitness (log2 ratio) -1
0
1 at 896.049 kb on + strand, within SMc00888 at 896.127 kb on + strand, within SMc00888 at 896.128 kb on - strand, within SMc00888 at 896.128 kb on - strand, within SMc00888 at 896.762 kb on + strand, within SMc00888 at 897.025 kb on + strand at 897.025 kb on + strand at 897.025 kb on + strand at 897.026 kb on - strand at 897.026 kb on - strand at 897.522 kb on - strand, within SMc00887 at 897.696 kb on - strand, within SMc00887 at 897.883 kb on - strand, within SMc00887 at 897.883 kb on - strand, within SMc00887 at 898.077 kb on + strand, within SMc00887 at 898.077 kb on + strand, within SMc00887 at 898.078 kb on - strand, within SMc00887 at 898.078 kb on - strand, within SMc00887 at 898.126 kb on + strand, within SMc00887 at 898.127 kb on - strand, within SMc00887 at 898.127 kb on - strand, within SMc00887 at 898.127 kb on - strand, within SMc00887 at 898.247 kb on + strand at 898.247 kb on + strand at 898.254 kb on - strand at 898.289 kb on + strand at 898.290 kb on - strand at 898.448 kb on + strand, within SMc00929 at 898.449 kb on - strand, within SMc00929 at 898.583 kb on + strand, within SMc00929 at 898.583 kb on + strand, within SMc00929 at 898.583 kb on + strand, within SMc00929 at 898.743 kb on + strand, within SMc00929 at 898.744 kb on - strand, within SMc00929 at 898.745 kb on + strand, within SMc00929 at 898.745 kb on + strand, within SMc00929 at 898.746 kb on - strand, within SMc00929 at 898.799 kb on + strand, within SMc00929
Per-strain Table
Position Strand Gene LocusTag Fraction Lactulose (C) remove 896,049 + SMc00888 0.46 +0.0 896,127 + SMc00888 0.51 -0.4 896,128 - SMc00888 0.51 -0.0 896,128 - SMc00888 0.51 -0.2 896,762 + SMc00888 0.87 -0.3 897,025 + -0.2 897,025 + +0.6 897,025 + +0.4 897,026 - -0.2 897,026 - -0.3 897,522 - SMc00887 0.40 +0.2 897,696 - SMc00887 0.53 -0.0 897,883 - SMc00887 0.67 +0.2 897,883 - SMc00887 0.67 +0.5 898,077 + SMc00887 0.81 +0.6 898,077 + SMc00887 0.81 +1.1 898,078 - SMc00887 0.81 +0.1 898,078 - SMc00887 0.81 +0.3 898,126 + SMc00887 0.85 +0.5 898,127 - SMc00887 0.85 +0.3 898,127 - SMc00887 0.85 +0.3 898,127 - SMc00887 0.85 +0.2 898,247 + -0.3 898,247 + +0.6 898,254 - -0.4 898,289 + -0.1 898,290 - +0.5 898,448 + SMc00929 0.15 +0.8 898,449 - SMc00929 0.15 -0.8 898,583 + SMc00929 0.29 -0.8 898,583 + SMc00929 0.29 +0.2 898,583 + SMc00929 0.29 +0.3 898,743 + SMc00929 0.45 +0.3 898,744 - SMc00929 0.45 -0.3 898,745 + SMc00929 0.45 +0.3 898,745 + SMc00929 0.45 -0.0 898,746 - SMc00929 0.45 -0.0 898,799 + SMc00929 0.51 +1.5
Or see this region's nucleotide sequence