Strain Fitness in Sinorhizobium meliloti 1021 around SMc00879

Experiment: Lactulose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc00881 and SMc00880 overlap by 4 nucleotidesSMc00880 and SMc00879 are separated by 125 nucleotidesSMc00879 and SMc00878 are separated by 227 nucleotides SMc00881: SMc00881 - 2-dehydro-3-deoxygalactonokinase, at 905,344 to 906,264 SMc00881 SMc00880: SMc00880 - oxidoreductase, at 906,261 to 907,031 SMc00880 SMc00879: SMc00879 - transcriptional regulator, at 907,157 to 908,011 SMc00879 SMc00878: SMc00878 - transcriptional regulator, at 908,239 to 908,979 SMc00878 Position (kb) 907 908 909Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 906.245 kb on + strandat 906.249 kb on - strandat 906.476 kb on + strand, within SMc00880at 906.477 kb on - strand, within SMc00880at 906.564 kb on - strand, within SMc00880at 906.957 kb on + strandat 907.122 kb on - strandat 907.122 kb on - strandat 907.134 kb on + strandat 907.278 kb on + strand, within SMc00879at 907.278 kb on + strand, within SMc00879at 907.279 kb on - strand, within SMc00879at 907.374 kb on - strand, within SMc00879at 907.451 kb on + strand, within SMc00879at 907.524 kb on - strand, within SMc00879at 907.559 kb on - strand, within SMc00879at 907.559 kb on - strand, within SMc00879at 907.593 kb on - strand, within SMc00879at 907.725 kb on + strand, within SMc00879at 907.726 kb on - strand, within SMc00879at 907.856 kb on + strand, within SMc00879at 907.857 kb on - strand, within SMc00879at 907.857 kb on - strand, within SMc00879at 908.025 kb on + strandat 908.025 kb on - strandat 908.070 kb on - strandat 908.106 kb on + strandat 908.106 kb on + strandat 908.106 kb on + strandat 908.106 kb on + strandat 908.106 kb on + strandat 908.106 kb on + strandat 908.107 kb on - strandat 908.107 kb on - strandat 908.107 kb on - strandat 908.110 kb on + strandat 908.181 kb on + strandat 908.182 kb on - strandat 908.259 kb on + strandat 908.259 kb on + strandat 908.260 kb on - strandat 908.260 kb on - strandat 908.260 kb on - strandat 908.260 kb on - strandat 908.261 kb on + strandat 908.261 kb on + strandat 908.261 kb on + strandat 908.261 kb on + strandat 908.261 kb on + strandat 908.262 kb on - strandat 908.533 kb on + strand, within SMc00878at 908.533 kb on + strand, within SMc00878at 908.533 kb on + strand, within SMc00878at 908.588 kb on + strand, within SMc00878at 908.588 kb on + strand, within SMc00878at 908.588 kb on + strand, within SMc00878at 908.589 kb on - strand, within SMc00878at 908.589 kb on - strand, within SMc00878at 908.589 kb on - strand, within SMc00878at 908.589 kb on - strand, within SMc00878at 908.627 kb on - strand, within SMc00878at 908.627 kb on - strand, within SMc00878at 908.738 kb on + strand, within SMc00878at 908.738 kb on + strand, within SMc00878at 908.738 kb on + strand, within SMc00878at 908.738 kb on + strandat 908.738 kb on + strand, within SMc00878at 908.738 kb on + strand, within SMc00878at 908.739 kb on - strand, within SMc00878at 908.739 kb on - strand, within SMc00878at 908.739 kb on - strand, within SMc00878at 908.739 kb on - strand, within SMc00878at 908.739 kb on - strand, within SMc00878at 908.740 kb on + strand, within SMc00878at 908.741 kb on - strand, within SMc00878at 908.741 kb on - strand, within SMc00878at 908.879 kb on - strand, within SMc00878at 908.880 kb on + strand, within SMc00878at 908.880 kb on + strand, within SMc00878at 908.881 kb on - strand, within SMc00878at 908.893 kb on + strand, within SMc00878at 908.894 kb on - strand, within SMc00878at 908.957 kb on + strandat 908.957 kb on + strandat 908.958 kb on - strandat 908.997 kb on + strandat 908.997 kb on + strandat 908.998 kb on - strandat 908.998 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Lactulose (C)
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906,245 + -2.7
906,249 - -0.6
906,476 + SMc00880 0.28 -3.5
906,477 - SMc00880 0.28 +0.6
906,564 - SMc00880 0.39 +0.4
906,957 + -1.7
907,122 - -1.9
907,122 - -0.6
907,134 + +0.4
907,278 + SMc00879 0.14 -1.5
907,278 + SMc00879 0.14 -0.1
907,279 - SMc00879 0.14 +0.3
907,374 - SMc00879 0.25 -0.2
907,451 + SMc00879 0.34 -0.2
907,524 - SMc00879 0.43 +0.2
907,559 - SMc00879 0.47 +1.4
907,559 - SMc00879 0.47 -1.4
907,593 - SMc00879 0.51 -0.8
907,725 + SMc00879 0.66 +0.1
907,726 - SMc00879 0.67 +0.9
907,856 + SMc00879 0.82 -0.5
907,857 - SMc00879 0.82 -0.1
907,857 - SMc00879 0.82 -0.9
908,025 + -0.2
908,025 - +0.2
908,070 - +0.7
908,106 + +1.2
908,106 + +0.9
908,106 + +0.1
908,106 + +0.0
908,106 + +0.3
908,106 + -0.2
908,107 - +0.8
908,107 - +0.4
908,107 - +0.6
908,110 + -0.0
908,181 + -0.2
908,182 - +0.9
908,259 + +0.9
908,259 + -0.6
908,260 - -0.1
908,260 - +1.4
908,260 - +0.9
908,260 - +1.2
908,261 + +0.5
908,261 + +0.0
908,261 + +0.7
908,261 + +0.0
908,261 + -0.1
908,262 - +0.5
908,533 + SMc00878 0.40 +1.9
908,533 + SMc00878 0.40 +0.9
908,533 + SMc00878 0.40 +0.0
908,588 + SMc00878 0.47 +0.4
908,588 + SMc00878 0.47 +0.3
908,588 + SMc00878 0.47 +0.2
908,589 - SMc00878 0.47 +1.0
908,589 - SMc00878 0.47 +0.2
908,589 - SMc00878 0.47 -0.9
908,589 - SMc00878 0.47 +0.6
908,627 - SMc00878 0.52 +0.7
908,627 - SMc00878 0.52 -0.3
908,738 + SMc00878 0.67 +0.2
908,738 + SMc00878 0.67 +1.2
908,738 + SMc00878 0.67 -1.2
908,738 + +1.2
908,738 + SMc00878 0.67 -0.0
908,738 + SMc00878 0.67 +0.4
908,739 - SMc00878 0.67 +0.6
908,739 - SMc00878 0.67 +0.3
908,739 - SMc00878 0.67 +0.3
908,739 - SMc00878 0.67 +0.8
908,739 - SMc00878 0.67 +0.4
908,740 + SMc00878 0.68 +0.5
908,741 - SMc00878 0.68 +1.2
908,741 - SMc00878 0.68 +0.5
908,879 - SMc00878 0.86 +0.5
908,880 + SMc00878 0.87 +0.1
908,880 + SMc00878 0.87 +0.4
908,881 - SMc00878 0.87 +1.1
908,893 + SMc00878 0.88 +0.7
908,894 - SMc00878 0.88 +0.6
908,957 + +0.5
908,957 + +0.7
908,958 - +0.5
908,997 + -0.0
908,997 + -0.3
908,998 - +0.7
908,998 - +0.3

Or see this region's nucleotide sequence