Experiment: Lactulose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0714 and SMa0715 are separated by 1 nucleotides SMa0715 and SMa0717 overlap by 22 nucleotides SMa0717 and SMa0719 are separated by 57 nucleotides SMa0719 and SMa0722 are separated by 98 nucleotides
SMa0714: SMa0714 - ABC transporter ATP-binding protein, at 387,807 to 388,304
SMa0714
SMa0715: SMa0715 - Nucleoside-diphosphate-sugar epimerase, at 388,306 to 389,286
SMa0715
SMa0717: SMa0717 - hypothetical protein, at 389,265 to 390,974
SMa0717
SMa0719: SMa0719 - short-chain alcohol dehydrogenase, at 391,032 to 391,751
SMa0719
SMa0722: SMa0722 - transposase, at 391,850 to 392,461
SMa0722
Position (kb) 389
390
391 Strain fitness (log2 ratio) -2
-1
0
1 at 388.472 kb on + strand, within SMa0715 at 388.472 kb on + strand, within SMa0715 at 388.781 kb on + strand, within SMa0715 at 388.782 kb on - strand, within SMa0715 at 388.992 kb on + strand, within SMa0715 at 388.992 kb on + strand, within SMa0715 at 388.993 kb on - strand, within SMa0715 at 388.993 kb on - strand, within SMa0715 at 388.995 kb on + strand, within SMa0715 at 388.996 kb on - strand, within SMa0715 at 389.037 kb on + strand, within SMa0715 at 389.037 kb on + strand, within SMa0715 at 389.038 kb on - strand, within SMa0715 at 389.061 kb on + strand, within SMa0715 at 389.115 kb on - strand, within SMa0715 at 389.273 kb on + strand at 389.285 kb on - strand at 389.359 kb on + strand at 389.359 kb on + strand at 389.360 kb on - strand at 389.494 kb on - strand, within SMa0717 at 389.787 kb on + strand, within SMa0717 at 389.787 kb on + strand, within SMa0717 at 389.787 kb on + strand, within SMa0717 at 389.787 kb on + strand, within SMa0717 at 389.799 kb on - strand, within SMa0717 at 390.236 kb on + strand, within SMa0717 at 390.251 kb on + strand, within SMa0717 at 390.251 kb on + strand, within SMa0717 at 390.251 kb on + strand, within SMa0717 at 390.252 kb on - strand, within SMa0717 at 390.357 kb on - strand, within SMa0717 at 390.483 kb on + strand, within SMa0717 at 390.508 kb on + strand, within SMa0717 at 390.508 kb on + strand, within SMa0717 at 390.576 kb on + strand, within SMa0717 at 390.576 kb on + strand, within SMa0717 at 390.606 kb on + strand, within SMa0717 at 390.606 kb on + strand, within SMa0717 at 390.606 kb on + strand at 390.606 kb on + strand, within SMa0717 at 390.607 kb on - strand, within SMa0717 at 390.612 kb on + strand, within SMa0717 at 390.993 kb on + strand at 390.993 kb on + strand at 390.994 kb on - strand at 390.994 kb on - strand at 390.996 kb on - strand at 391.077 kb on + strand at 391.077 kb on + strand at 391.078 kb on - strand at 391.385 kb on + strand, within SMa0719 at 391.491 kb on - strand, within SMa0719 at 391.538 kb on - strand, within SMa0719 at 391.620 kb on + strand, within SMa0719 at 391.706 kb on + strand at 391.707 kb on - strand at 391.914 kb on - strand, within SMa0722 at 391.931 kb on - strand, within SMa0722
Per-strain Table
Position Strand Gene LocusTag Fraction Lactulose (C) remove 388,472 + SMa0715 0.17 -0.6 388,472 + SMa0715 0.17 -0.8 388,781 + SMa0715 0.48 -0.3 388,782 - SMa0715 0.49 +0.5 388,992 + SMa0715 0.70 +0.2 388,992 + SMa0715 0.70 -1.9 388,993 - SMa0715 0.70 -0.6 388,993 - SMa0715 0.70 +0.1 388,995 + SMa0715 0.70 +0.5 388,996 - SMa0715 0.70 -0.4 389,037 + SMa0715 0.75 +0.2 389,037 + SMa0715 0.75 -0.4 389,038 - SMa0715 0.75 -0.2 389,061 + SMa0715 0.77 +0.7 389,115 - SMa0715 0.82 -0.2 389,273 + +0.1 389,285 - -1.4 389,359 + -0.4 389,359 + -1.2 389,360 - -0.2 389,494 - SMa0717 0.13 -2.3 389,787 + SMa0717 0.31 -1.1 389,787 + SMa0717 0.31 -0.4 389,787 + SMa0717 0.31 -2.1 389,787 + SMa0717 0.31 -0.4 389,799 - SMa0717 0.31 -0.9 390,236 + SMa0717 0.57 +0.1 390,251 + SMa0717 0.58 +0.1 390,251 + SMa0717 0.58 -1.0 390,251 + SMa0717 0.58 -1.4 390,252 - SMa0717 0.58 -0.8 390,357 - SMa0717 0.64 -0.6 390,483 + SMa0717 0.71 -1.4 390,508 + SMa0717 0.73 -1.1 390,508 + SMa0717 0.73 +0.2 390,576 + SMa0717 0.77 -1.0 390,576 + SMa0717 0.77 -0.4 390,606 + SMa0717 0.78 -0.8 390,606 + SMa0717 0.78 -0.7 390,606 + -0.3 390,606 + SMa0717 0.78 +0.1 390,607 - SMa0717 0.78 -0.7 390,612 + SMa0717 0.79 -1.6 390,993 + -0.3 390,993 + +0.2 390,994 - +0.0 390,994 - +0.0 390,996 - +1.1 391,077 + -0.0 391,077 + +0.1 391,078 - -0.4 391,385 + SMa0719 0.49 -0.4 391,491 - SMa0719 0.64 -0.5 391,538 - SMa0719 0.70 +0.3 391,620 + SMa0719 0.82 +0.2 391,706 + -1.4 391,707 - +0.0 391,914 - SMa0722 0.10 -0.0 391,931 - SMa0722 0.13 -0.7
Or see this region's nucleotide sequence