Experiment: Lactulose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21370 and SM_b21371 are separated by 7 nucleotides SM_b21371 and SM_b21372 are separated by 3 nucleotides SM_b21372 and SM_b21373 are separated by 111 nucleotides
SM_b21370: SM_b21370 - cytochrome c oxidase subunit I, at 1,033,638 to 1,036,163
_b21370
SM_b21371: SM_b21371 - hypothetical protein, at 1,036,171 to 1,036,542
_b21371
SM_b21372: SM_b21372 - LacI family transcriptional regulator, at 1,036,546 to 1,037,604
_b21372
SM_b21373: SM_b21373 - D-tagatose 6-phosphate 4-epimerase [EC:5.1.3.40] (from data) , at 1,037,716 to 1,038,996
_b21373
Position (kb)
1036
1037
1038 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1035.585 kb on + strand, within SM_b21370 at 1035.585 kb on + strand, within SM_b21370 at 1035.585 kb on + strand, within SM_b21370 at 1035.585 kb on + strand, within SM_b21370 at 1035.585 kb on + strand, within SM_b21370 at 1035.585 kb on + strand, within SM_b21370 at 1035.586 kb on - strand, within SM_b21370 at 1035.586 kb on - strand, within SM_b21370 at 1035.586 kb on - strand, within SM_b21370 at 1035.586 kb on - strand, within SM_b21370 at 1035.586 kb on - strand, within SM_b21370 at 1035.588 kb on - strand, within SM_b21370 at 1035.654 kb on + strand, within SM_b21370 at 1035.654 kb on + strand, within SM_b21370 at 1035.654 kb on + strand, within SM_b21370 at 1035.655 kb on - strand, within SM_b21370 at 1035.663 kb on + strand, within SM_b21370 at 1035.663 kb on + strand, within SM_b21370 at 1035.676 kb on - strand, within SM_b21370 at 1035.676 kb on - strand, within SM_b21370 at 1035.793 kb on + strand, within SM_b21370 at 1035.793 kb on + strand, within SM_b21370 at 1035.793 kb on + strand, within SM_b21370 at 1035.793 kb on + strand, within SM_b21370 at 1035.794 kb on - strand, within SM_b21370 at 1035.794 kb on - strand, within SM_b21370 at 1035.794 kb on - strand, within SM_b21370 at 1035.946 kb on - strand at 1035.960 kb on + strand at 1036.080 kb on + strand at 1036.080 kb on + strand at 1036.081 kb on - strand at 1036.081 kb on - strand at 1036.081 kb on - strand at 1036.092 kb on + strand at 1036.092 kb on + strand at 1036.092 kb on + strand at 1036.098 kb on + strand at 1036.098 kb on + strand at 1036.099 kb on - strand at 1036.264 kb on + strand, within SM_b21371 at 1036.264 kb on + strand, within SM_b21371 at 1036.265 kb on - strand, within SM_b21371 at 1036.265 kb on - strand, within SM_b21371 at 1036.265 kb on - strand, within SM_b21371 at 1036.266 kb on + strand, within SM_b21371 at 1036.267 kb on - strand, within SM_b21371 at 1036.679 kb on + strand, within SM_b21372 at 1036.680 kb on - strand, within SM_b21372 at 1036.680 kb on - strand, within SM_b21372 at 1036.680 kb on - strand, within SM_b21372 at 1036.716 kb on - strand, within SM_b21372 at 1036.925 kb on + strand, within SM_b21372 at 1036.925 kb on + strand, within SM_b21372 at 1036.925 kb on + strand, within SM_b21372 at 1036.925 kb on + strand, within SM_b21372 at 1036.926 kb on - strand, within SM_b21372 at 1036.926 kb on - strand, within SM_b21372 at 1036.926 kb on - strand, within SM_b21372 at 1036.982 kb on + strand, within SM_b21372 at 1036.982 kb on + strand, within SM_b21372 at 1036.982 kb on + strand, within SM_b21372 at 1036.982 kb on + strand, within SM_b21372 at 1036.983 kb on - strand, within SM_b21372 at 1037.033 kb on + strand, within SM_b21372 at 1037.034 kb on - strand, within SM_b21372 at 1037.034 kb on - strand, within SM_b21372 at 1037.034 kb on - strand, within SM_b21372 at 1037.141 kb on + strand, within SM_b21372 at 1037.141 kb on + strand, within SM_b21372 at 1037.141 kb on + strand, within SM_b21372 at 1037.142 kb on - strand, within SM_b21372 at 1037.351 kb on + strand, within SM_b21372 at 1037.351 kb on + strand, within SM_b21372 at 1037.351 kb on + strand, within SM_b21372 at 1037.351 kb on + strand, within SM_b21372 at 1037.351 kb on + strand, within SM_b21372 at 1037.351 kb on + strand, within SM_b21372 at 1037.352 kb on - strand, within SM_b21372 at 1037.352 kb on - strand, within SM_b21372 at 1037.352 kb on - strand, within SM_b21372 at 1037.452 kb on + strand, within SM_b21372 at 1037.453 kb on - strand, within SM_b21372 at 1037.510 kb on + strand at 1037.511 kb on - strand at 1037.819 kb on + strand at 1037.928 kb on - strand, within SM_b21373 at 1037.944 kb on - strand, within SM_b21373 at 1037.945 kb on + strand, within SM_b21373 at 1037.993 kb on + strand, within SM_b21373 at 1037.994 kb on - strand, within SM_b21373 at 1038.278 kb on + strand at 1038.279 kb on - strand, within SM_b21373 at 1038.436 kb on + strand at 1038.437 kb on - strand, within SM_b21373 at 1038.437 kb on - strand, within SM_b21373
Per-strain Table
Position Strand Gene LocusTag Fraction Lactulose (C) remove 1,035,585 + SM_b21370 0.77 +1.6 1,035,585 + SM_b21370 0.77 +0.4 1,035,585 + SM_b21370 0.77 +0.7 1,035,585 + SM_b21370 0.77 -0.5 1,035,585 + SM_b21370 0.77 +0.3 1,035,585 + SM_b21370 0.77 -0.1 1,035,586 - SM_b21370 0.77 +0.8 1,035,586 - SM_b21370 0.77 -0.2 1,035,586 - SM_b21370 0.77 -1.9 1,035,586 - SM_b21370 0.77 +0.1 1,035,586 - SM_b21370 0.77 +0.2 1,035,588 - SM_b21370 0.77 -1.4 1,035,654 + SM_b21370 0.80 +0.1 1,035,654 + SM_b21370 0.80 -0.1 1,035,654 + SM_b21370 0.80 +0.7 1,035,655 - SM_b21370 0.80 -1.0 1,035,663 + SM_b21370 0.80 -1.0 1,035,663 + SM_b21370 0.80 +0.1 1,035,676 - SM_b21370 0.81 -1.3 1,035,676 - SM_b21370 0.81 -0.4 1,035,793 + SM_b21370 0.85 -0.0 1,035,793 + SM_b21370 0.85 +1.3 1,035,793 + SM_b21370 0.85 -0.3 1,035,793 + SM_b21370 0.85 -0.6 1,035,794 - SM_b21370 0.85 -1.5 1,035,794 - SM_b21370 0.85 +0.5 1,035,794 - SM_b21370 0.85 +0.0 1,035,946 - -0.0 1,035,960 + +0.1 1,036,080 + -0.0 1,036,080 + +0.2 1,036,081 - -0.6 1,036,081 - +0.2 1,036,081 - -0.4 1,036,092 + +0.3 1,036,092 + +0.1 1,036,092 + -0.3 1,036,098 + -0.5 1,036,098 + -0.2 1,036,099 - +0.0 1,036,264 + SM_b21371 0.25 -0.5 1,036,264 + SM_b21371 0.25 -0.1 1,036,265 - SM_b21371 0.25 -0.2 1,036,265 - SM_b21371 0.25 +0.7 1,036,265 - SM_b21371 0.25 -0.5 1,036,266 + SM_b21371 0.26 +0.7 1,036,267 - SM_b21371 0.26 -0.0 1,036,679 + SM_b21372 0.13 -1.3 1,036,680 - SM_b21372 0.13 +0.4 1,036,680 - SM_b21372 0.13 -0.8 1,036,680 - SM_b21372 0.13 -0.4 1,036,716 - SM_b21372 0.16 -0.3 1,036,925 + SM_b21372 0.36 -2.5 1,036,925 + SM_b21372 0.36 -0.8 1,036,925 + SM_b21372 0.36 -1.0 1,036,925 + SM_b21372 0.36 +1.0 1,036,926 - SM_b21372 0.36 +0.3 1,036,926 - SM_b21372 0.36 -1.9 1,036,926 - SM_b21372 0.36 -0.6 1,036,982 + SM_b21372 0.41 -1.0 1,036,982 + SM_b21372 0.41 +0.6 1,036,982 + SM_b21372 0.41 -0.8 1,036,982 + SM_b21372 0.41 +0.1 1,036,983 - SM_b21372 0.41 -1.6 1,037,033 + SM_b21372 0.46 +1.0 1,037,034 - SM_b21372 0.46 +1.0 1,037,034 - SM_b21372 0.46 -1.2 1,037,034 - SM_b21372 0.46 -1.4 1,037,141 + SM_b21372 0.56 -1.2 1,037,141 + SM_b21372 0.56 -1.4 1,037,141 + SM_b21372 0.56 -0.2 1,037,142 - SM_b21372 0.56 -0.4 1,037,351 + SM_b21372 0.76 -1.4 1,037,351 + SM_b21372 0.76 -0.9 1,037,351 + SM_b21372 0.76 -1.1 1,037,351 + SM_b21372 0.76 +0.3 1,037,351 + SM_b21372 0.76 -1.5 1,037,351 + SM_b21372 0.76 -1.7 1,037,352 - SM_b21372 0.76 -0.9 1,037,352 - SM_b21372 0.76 -0.2 1,037,352 - SM_b21372 0.76 -1.3 1,037,452 + SM_b21372 0.86 -0.8 1,037,453 - SM_b21372 0.86 -2.0 1,037,510 + -1.1 1,037,511 - -0.8 1,037,819 + +2.0 1,037,928 - SM_b21373 0.17 -0.2 1,037,944 - SM_b21373 0.18 +0.5 1,037,945 + SM_b21373 0.18 +0.5 1,037,993 + SM_b21373 0.22 -1.0 1,037,994 - SM_b21373 0.22 -0.6 1,038,278 + -0.0 1,038,279 - SM_b21373 0.44 -0.0 1,038,436 + +0.4 1,038,437 - SM_b21373 0.56 -0.4 1,038,437 - SM_b21373 0.56 +0.2
Or see this region's nucleotide sequence