Strain Fitness in Sinorhizobium meliloti 1021 around SM_b21102

Experiment: Lactulose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b21101 and SM_b21102 are separated by 50 nucleotidesSM_b21102 and SM_b21103 are separated by 167 nucleotides SM_b21101: SM_b21101 - L-fucono-1,5-lactonase; D-arabinolactonase (from data), at 743,136 to 743,972 _b21101 SM_b21102: SM_b21102 - transcriptional regulator, at 744,023 to 744,805 _b21102 SM_b21103: SM_b21103 - ABC transporter for L-Fucose, periplasmic substrate-binding protein (from data), at 744,973 to 746,292 _b21103 Position (kb) 744 745Strain fitness (log2 ratio) -2 -1 0 1 2at 743.061 kb on + strandat 743.061 kb on + strandat 743.061 kb on + strandat 743.134 kb on + strandat 743.134 kb on + strandat 743.135 kb on - strandat 743.327 kb on - strand, within SM_b21101at 743.327 kb on - strand, within SM_b21101at 743.366 kb on - strand, within SM_b21101at 743.423 kb on + strand, within SM_b21101at 743.424 kb on - strand, within SM_b21101at 743.457 kb on + strand, within SM_b21101at 743.457 kb on + strand, within SM_b21101at 743.458 kb on - strand, within SM_b21101at 743.458 kb on - strand, within SM_b21101at 743.522 kb on + strand, within SM_b21101at 743.522 kb on + strand, within SM_b21101at 743.693 kb on - strand, within SM_b21101at 743.826 kb on - strand, within SM_b21101at 743.869 kb on + strand, within SM_b21101at 743.878 kb on + strand, within SM_b21101at 743.923 kb on + strandat 743.924 kb on - strandat 744.136 kb on + strand, within SM_b21102at 744.136 kb on + strand, within SM_b21102at 744.136 kb on + strand, within SM_b21102at 744.136 kb on + strand, within SM_b21102at 744.136 kb on + strand, within SM_b21102at 744.137 kb on - strand, within SM_b21102at 744.137 kb on - strand, within SM_b21102at 744.137 kb on - strand, within SM_b21102at 744.138 kb on + strand, within SM_b21102at 744.138 kb on + strand, within SM_b21102at 744.138 kb on + strand, within SM_b21102at 744.138 kb on + strand, within SM_b21102at 744.138 kb on + strand, within SM_b21102at 744.138 kb on + strand, within SM_b21102at 744.201 kb on + strand, within SM_b21102at 744.202 kb on - strand, within SM_b21102at 744.202 kb on - strand, within SM_b21102at 744.202 kb on - strand, within SM_b21102at 744.238 kb on - strand, within SM_b21102at 744.270 kb on + strand, within SM_b21102at 744.270 kb on + strand, within SM_b21102at 744.271 kb on - strand, within SM_b21102at 744.395 kb on - strand, within SM_b21102at 744.603 kb on + strand, within SM_b21102at 744.630 kb on + strand, within SM_b21102at 744.630 kb on + strand, within SM_b21102at 744.631 kb on - strand, within SM_b21102at 744.970 kb on - strandat 744.970 kb on - strandat 745.121 kb on - strand, within SM_b21103at 745.167 kb on + strand, within SM_b21103at 745.167 kb on + strand, within SM_b21103at 745.291 kb on + strand, within SM_b21103at 745.291 kb on + strand, within SM_b21103at 745.291 kb on + strand, within SM_b21103at 745.291 kb on + strand, within SM_b21103at 745.292 kb on - strand, within SM_b21103at 745.439 kb on - strand, within SM_b21103at 745.477 kb on + strand, within SM_b21103at 745.478 kb on - strand, within SM_b21103at 745.478 kb on - strand, within SM_b21103at 745.478 kb on - strand, within SM_b21103at 745.606 kb on + strand, within SM_b21103at 745.636 kb on + strand, within SM_b21103at 745.637 kb on - strand, within SM_b21103at 745.637 kb on - strand, within SM_b21103at 745.637 kb on - strand, within SM_b21103at 745.711 kb on + strand, within SM_b21103at 745.711 kb on + strand, within SM_b21103at 745.712 kb on - strand, within SM_b21103at 745.712 kb on - strand, within SM_b21103at 745.747 kb on + strand, within SM_b21103at 745.747 kb on + strand, within SM_b21103at 745.747 kb on + strand, within SM_b21103at 745.747 kb on + strand, within SM_b21103at 745.748 kb on - strand, within SM_b21103

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Per-strain Table

Position Strand Gene LocusTag Fraction Lactulose (C)
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743,061 + -0.5
743,061 + -0.0
743,061 + +0.6
743,134 + -0.5
743,134 + +0.7
743,135 - -0.2
743,327 - SM_b21101 0.23 -0.6
743,327 - SM_b21101 0.23 -0.3
743,366 - SM_b21101 0.27 +2.4
743,423 + SM_b21101 0.34 -1.1
743,424 - SM_b21101 0.34 -0.4
743,457 + SM_b21101 0.38 -0.8
743,457 + SM_b21101 0.38 +0.2
743,458 - SM_b21101 0.38 +0.4
743,458 - SM_b21101 0.38 -1.0
743,522 + SM_b21101 0.46 +0.3
743,522 + SM_b21101 0.46 -1.4
743,693 - SM_b21101 0.67 -0.1
743,826 - SM_b21101 0.82 -0.8
743,869 + SM_b21101 0.88 +0.4
743,878 + SM_b21101 0.89 +0.1
743,923 + +1.4
743,924 - +0.0
744,136 + SM_b21102 0.14 +0.5
744,136 + SM_b21102 0.14 -0.9
744,136 + SM_b21102 0.14 -0.6
744,136 + SM_b21102 0.14 -1.2
744,136 + SM_b21102 0.14 -2.4
744,137 - SM_b21102 0.15 -0.7
744,137 - SM_b21102 0.15 -0.6
744,137 - SM_b21102 0.15 -0.8
744,138 + SM_b21102 0.15 -0.5
744,138 + SM_b21102 0.15 -0.8
744,138 + SM_b21102 0.15 -2.1
744,138 + SM_b21102 0.15 -2.4
744,138 + SM_b21102 0.15 +0.1
744,138 + SM_b21102 0.15 -1.2
744,201 + SM_b21102 0.23 -0.4
744,202 - SM_b21102 0.23 -1.9
744,202 - SM_b21102 0.23 -1.2
744,202 - SM_b21102 0.23 -1.5
744,238 - SM_b21102 0.27 +0.7
744,270 + SM_b21102 0.32 -1.7
744,270 + SM_b21102 0.32 -0.3
744,271 - SM_b21102 0.32 -0.5
744,395 - SM_b21102 0.48 +0.3
744,603 + SM_b21102 0.74 -1.7
744,630 + SM_b21102 0.78 -0.4
744,630 + SM_b21102 0.78 -2.1
744,631 - SM_b21102 0.78 +0.3
744,970 - -0.2
744,970 - +0.7
745,121 - SM_b21103 0.11 +0.5
745,167 + SM_b21103 0.15 +0.2
745,167 + SM_b21103 0.15 +0.7
745,291 + SM_b21103 0.24 -0.0
745,291 + SM_b21103 0.24 -0.4
745,291 + SM_b21103 0.24 +0.3
745,291 + SM_b21103 0.24 -0.9
745,292 - SM_b21103 0.24 -0.3
745,439 - SM_b21103 0.35 -0.3
745,477 + SM_b21103 0.38 +0.0
745,478 - SM_b21103 0.38 -0.4
745,478 - SM_b21103 0.38 -0.2
745,478 - SM_b21103 0.38 -0.2
745,606 + SM_b21103 0.48 +0.2
745,636 + SM_b21103 0.50 -0.9
745,637 - SM_b21103 0.50 -0.1
745,637 - SM_b21103 0.50 -0.5
745,637 - SM_b21103 0.50 +0.5
745,711 + SM_b21103 0.56 +0.2
745,711 + SM_b21103 0.56 +0.1
745,712 - SM_b21103 0.56 -0.8
745,712 - SM_b21103 0.56 -0.3
745,747 + SM_b21103 0.59 -1.1
745,747 + SM_b21103 0.59 -0.2
745,747 + SM_b21103 0.59 -0.1
745,747 + SM_b21103 0.59 -0.3
745,748 - SM_b21103 0.59 -0.2

Or see this region's nucleotide sequence