Experiment: Lactulose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20393 and SM_b20394 are separated by 23 nucleotides SM_b20394 and SM_b20395 are separated by 39 nucleotides
SM_b20393: SM_b20393 - ribulose bisphosphate carboxylaseoxygenase, large subunit protein, at 406,532 to 407,788
_b20393
SM_b20394: SM_b20394 - hypothetical protein, at 407,812 to 409,140
_b20394
SM_b20395: SM_b20395 - dehydrogenase, at 409,180 to 411,429
_b20395
Position (kb) 407
408
409
410 Strain fitness (log2 ratio) -2
-1
0
1
2 at 406.836 kb on - strand, within SM_b20393 at 406.836 kb on - strand, within SM_b20393 at 406.836 kb on - strand, within SM_b20393 at 407.055 kb on - strand, within SM_b20393 at 407.174 kb on + strand, within SM_b20393 at 407.174 kb on + strand, within SM_b20393 at 407.175 kb on - strand, within SM_b20393 at 407.187 kb on + strand, within SM_b20393 at 407.188 kb on - strand, within SM_b20393 at 407.582 kb on + strand, within SM_b20393 at 407.582 kb on + strand, within SM_b20393 at 407.582 kb on + strand, within SM_b20393 at 407.583 kb on - strand, within SM_b20393 at 407.615 kb on + strand, within SM_b20393 at 407.615 kb on + strand, within SM_b20393 at 407.676 kb on + strand at 407.677 kb on - strand at 407.723 kb on + strand at 407.834 kb on - strand at 407.836 kb on + strand at 407.836 kb on + strand at 408.067 kb on + strand, within SM_b20394 at 408.068 kb on - strand, within SM_b20394 at 408.068 kb on - strand, within SM_b20394 at 408.113 kb on + strand, within SM_b20394 at 408.113 kb on + strand, within SM_b20394 at 408.113 kb on + strand, within SM_b20394 at 408.113 kb on + strand, within SM_b20394 at 408.113 kb on + strand, within SM_b20394 at 408.114 kb on - strand, within SM_b20394 at 408.241 kb on + strand, within SM_b20394 at 408.350 kb on + strand, within SM_b20394 at 408.350 kb on + strand, within SM_b20394 at 408.351 kb on - strand, within SM_b20394 at 408.529 kb on + strand, within SM_b20394 at 408.529 kb on + strand, within SM_b20394 at 408.529 kb on + strand, within SM_b20394 at 408.529 kb on + strand, within SM_b20394 at 408.529 kb on + strand, within SM_b20394 at 408.529 kb on + strand, within SM_b20394 at 408.530 kb on - strand, within SM_b20394 at 408.530 kb on - strand, within SM_b20394 at 408.797 kb on - strand, within SM_b20394 at 408.946 kb on - strand, within SM_b20394 at 408.987 kb on + strand, within SM_b20394 at 408.988 kb on - strand, within SM_b20394 at 408.988 kb on - strand, within SM_b20394 at 409.041 kb on + strand at 409.109 kb on - strand at 409.183 kb on + strand at 409.273 kb on + strand at 409.274 kb on - strand at 409.311 kb on + strand at 409.311 kb on + strand at 409.311 kb on + strand at 409.311 kb on + strand at 409.311 kb on + strand at 409.312 kb on - strand at 409.312 kb on - strand at 409.334 kb on + strand at 409.334 kb on + strand at 409.334 kb on + strand at 409.379 kb on + strand at 409.694 kb on + strand, within SM_b20395 at 409.694 kb on + strand, within SM_b20395 at 409.863 kb on + strand, within SM_b20395 at 409.863 kb on + strand, within SM_b20395 at 410.079 kb on - strand, within SM_b20395 at 410.079 kb on - strand, within SM_b20395 at 410.079 kb on - strand, within SM_b20395
Per-strain Table
Position Strand Gene LocusTag Fraction Lactulose (C) remove 406,836 - SM_b20393 0.24 -0.1 406,836 - SM_b20393 0.24 -0.0 406,836 - SM_b20393 0.24 +0.4 407,055 - SM_b20393 0.42 +0.4 407,174 + SM_b20393 0.51 +0.1 407,174 + SM_b20393 0.51 +0.6 407,175 - SM_b20393 0.51 +0.3 407,187 + SM_b20393 0.52 -0.6 407,188 - SM_b20393 0.52 -0.5 407,582 + SM_b20393 0.84 -0.8 407,582 + SM_b20393 0.84 -0.2 407,582 + SM_b20393 0.84 -0.3 407,583 - SM_b20393 0.84 +0.1 407,615 + SM_b20393 0.86 -1.3 407,615 + SM_b20393 0.86 -0.1 407,676 + +0.0 407,677 - +0.6 407,723 + +0.1 407,834 - -0.7 407,836 + +0.4 407,836 + +0.8 408,067 + SM_b20394 0.19 +0.0 408,068 - SM_b20394 0.19 -1.4 408,068 - SM_b20394 0.19 -0.1 408,113 + SM_b20394 0.23 +0.4 408,113 + SM_b20394 0.23 -0.1 408,113 + SM_b20394 0.23 +0.8 408,113 + SM_b20394 0.23 +0.4 408,113 + SM_b20394 0.23 -0.2 408,114 - SM_b20394 0.23 +0.9 408,241 + SM_b20394 0.32 +0.6 408,350 + SM_b20394 0.40 +0.0 408,350 + SM_b20394 0.40 -0.9 408,351 - SM_b20394 0.41 -0.5 408,529 + SM_b20394 0.54 +0.3 408,529 + SM_b20394 0.54 +0.7 408,529 + SM_b20394 0.54 -0.4 408,529 + SM_b20394 0.54 +0.2 408,529 + SM_b20394 0.54 -0.6 408,529 + SM_b20394 0.54 +0.2 408,530 - SM_b20394 0.54 +0.1 408,530 - SM_b20394 0.54 +0.6 408,797 - SM_b20394 0.74 +0.2 408,946 - SM_b20394 0.85 +0.3 408,987 + SM_b20394 0.88 +0.5 408,988 - SM_b20394 0.88 +0.2 408,988 - SM_b20394 0.88 +0.5 409,041 + -0.3 409,109 - +0.1 409,183 + -0.1 409,273 + -0.3 409,274 - -0.2 409,311 + +0.2 409,311 + -0.2 409,311 + +0.4 409,311 + -2.0 409,311 + -0.3 409,312 - +2.4 409,312 - +0.4 409,334 + +0.3 409,334 + -0.5 409,334 + +0.3 409,379 + -0.6 409,694 + SM_b20395 0.23 +0.7 409,694 + SM_b20395 0.23 +0.7 409,863 + SM_b20395 0.30 +1.2 409,863 + SM_b20395 0.30 +0.4 410,079 - SM_b20395 0.40 +1.5 410,079 - SM_b20395 0.40 +0.1 410,079 - SM_b20395 0.40 -0.3
Or see this region's nucleotide sequence