Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20107

Experiment: Lactulose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20105 and SM_b20106 are separated by 179 nucleotidesSM_b20106 and SM_b20107 are separated by 67 nucleotidesSM_b20107 and SM_b20108 are separated by 123 nucleotides SM_b20105: SM_b20105 - transcriptional regulator, at 116,012 to 116,644 _b20105 SM_b20106: SM_b20106 - transcriptional regulator, at 116,824 to 117,555 _b20106 SM_b20107: SM_b20107 - hypothetical protein, at 117,623 to 118,579 _b20107 SM_b20108: SM_b20108 - peptide ABC transporter substrate-binding protein, at 118,703 to 120,211 _b20108 Position (kb) 117 118 119Strain fitness (log2 ratio) -2 -1 0 1at 116.915 kb on + strand, within SM_b20106at 116.916 kb on - strand, within SM_b20106at 117.064 kb on + strand, within SM_b20106at 117.064 kb on + strand, within SM_b20106at 117.064 kb on + strand, within SM_b20106at 117.064 kb on + strand, within SM_b20106at 117.065 kb on - strand, within SM_b20106at 117.065 kb on - strand, within SM_b20106at 117.117 kb on + strand, within SM_b20106at 117.118 kb on - strand, within SM_b20106at 117.154 kb on + strand, within SM_b20106at 117.155 kb on - strand, within SM_b20106at 117.155 kb on - strand, within SM_b20106at 117.480 kb on - strand, within SM_b20106at 117.540 kb on + strandat 117.540 kb on + strandat 117.650 kb on + strandat 117.792 kb on - strand, within SM_b20107at 117.792 kb on - strand, within SM_b20107at 117.867 kb on + strand, within SM_b20107at 117.868 kb on - strand, within SM_b20107at 117.868 kb on - strand, within SM_b20107at 118.037 kb on + strand, within SM_b20107at 118.055 kb on + strand, within SM_b20107at 118.056 kb on - strand, within SM_b20107at 118.056 kb on - strand, within SM_b20107at 118.056 kb on - strand, within SM_b20107at 118.056 kb on - strand, within SM_b20107at 118.115 kb on + strand, within SM_b20107at 118.115 kb on + strand, within SM_b20107at 118.115 kb on + strand, within SM_b20107at 118.115 kb on + strand, within SM_b20107at 118.116 kb on - strand, within SM_b20107at 118.167 kb on + strand, within SM_b20107at 118.168 kb on - strand, within SM_b20107at 118.253 kb on + strand, within SM_b20107at 118.254 kb on - strand, within SM_b20107at 118.254 kb on - strand, within SM_b20107at 118.254 kb on - strand, within SM_b20107at 118.256 kb on - strand, within SM_b20107at 118.256 kb on - strand, within SM_b20107at 118.303 kb on + strand, within SM_b20107at 118.303 kb on + strand, within SM_b20107at 118.646 kb on - strandat 118.646 kb on - strandat 118.798 kb on - strandat 119.252 kb on + strand, within SM_b20108at 119.252 kb on + strand, within SM_b20108at 119.252 kb on + strand, within SM_b20108at 119.253 kb on - strand, within SM_b20108at 119.253 kb on - strand, within SM_b20108at 119.306 kb on + strand, within SM_b20108at 119.306 kb on + strand, within SM_b20108at 119.307 kb on - strand, within SM_b20108at 119.342 kb on + strand, within SM_b20108at 119.342 kb on + strand, within SM_b20108at 119.343 kb on - strand, within SM_b20108at 119.343 kb on - strand, within SM_b20108at 119.456 kb on + strand, within SM_b20108

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Per-strain Table

Position Strand Gene LocusTag Fraction Lactulose (C)
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116,915 + SM_b20106 0.12 +0.1
116,916 - SM_b20106 0.13 -0.9
117,064 + SM_b20106 0.33 +0.2
117,064 + SM_b20106 0.33 -1.4
117,064 + SM_b20106 0.33 -0.1
117,064 + SM_b20106 0.33 -0.0
117,065 - SM_b20106 0.33 -0.2
117,065 - SM_b20106 0.33 -0.4
117,117 + SM_b20106 0.40 -0.4
117,118 - SM_b20106 0.40 +0.4
117,154 + SM_b20106 0.45 -0.2
117,155 - SM_b20106 0.45 -0.1
117,155 - SM_b20106 0.45 -0.8
117,480 - SM_b20106 0.90 -0.2
117,540 + +0.3
117,540 + +0.5
117,650 + +0.3
117,792 - SM_b20107 0.18 -0.1
117,792 - SM_b20107 0.18 -0.1
117,867 + SM_b20107 0.25 +0.0
117,868 - SM_b20107 0.26 +0.9
117,868 - SM_b20107 0.26 -0.6
118,037 + SM_b20107 0.43 -0.0
118,055 + SM_b20107 0.45 +0.3
118,056 - SM_b20107 0.45 +0.8
118,056 - SM_b20107 0.45 -1.0
118,056 - SM_b20107 0.45 -0.1
118,056 - SM_b20107 0.45 -0.3
118,115 + SM_b20107 0.51 -0.1
118,115 + SM_b20107 0.51 -0.3
118,115 + SM_b20107 0.51 -1.8
118,115 + SM_b20107 0.51 +0.1
118,116 - SM_b20107 0.52 +0.3
118,167 + SM_b20107 0.57 -0.5
118,168 - SM_b20107 0.57 -0.1
118,253 + SM_b20107 0.66 +0.4
118,254 - SM_b20107 0.66 -0.5
118,254 - SM_b20107 0.66 +0.1
118,254 - SM_b20107 0.66 -0.9
118,256 - SM_b20107 0.66 -0.3
118,256 - SM_b20107 0.66 -0.6
118,303 + SM_b20107 0.71 -1.4
118,303 + SM_b20107 0.71 -1.8
118,646 - +0.1
118,646 - -0.2
118,798 - -0.3
119,252 + SM_b20108 0.36 -0.1
119,252 + SM_b20108 0.36 +0.4
119,252 + SM_b20108 0.36 +0.7
119,253 - SM_b20108 0.36 +0.9
119,253 - SM_b20108 0.36 +0.6
119,306 + SM_b20108 0.40 +0.1
119,306 + SM_b20108 0.40 +0.6
119,307 - SM_b20108 0.40 +0.4
119,342 + SM_b20108 0.42 -0.6
119,342 + SM_b20108 0.42 -2.7
119,343 - SM_b20108 0.42 +0.0
119,343 - SM_b20108 0.42 +0.0
119,456 + SM_b20108 0.50 -0.1

Or see this region's nucleotide sequence