Experiment: RCH2_defined_noCarbon with Mixed culture; Pseudomonas simiae WCS417 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS23700 and BWI76_RS23705 are separated by 2 nucleotides BWI76_RS23705 and BWI76_RS23710 are separated by 11 nucleotides
BWI76_RS23700: BWI76_RS23700 - glycerate CoA-transferase (from data) , at 4,946,698 to 4,948,299
_RS23700
BWI76_RS23705: BWI76_RS23705 - 2-deoxy-D-ribonyl-CoA 3-dehydrogenase (from data) , at 4,948,302 to 4,949,036
_RS23705
BWI76_RS23710: BWI76_RS23710 - 3-keto-2-deoxy-D-ribonyl-CoA thiolase (from data) , at 4,949,048 to 4,950,238
_RS23710
Position (kb)
4948
4949
4950 Strain fitness (log2 ratio)
-1
0
1
2 at 4947.527 kb on + strand, within BWI76_RS23700 at 4947.527 kb on + strand, within BWI76_RS23700 at 4947.535 kb on - strand, within BWI76_RS23700 at 4947.686 kb on - strand, within BWI76_RS23700 at 4947.728 kb on + strand, within BWI76_RS23700 at 4947.760 kb on + strand, within BWI76_RS23700 at 4947.808 kb on - strand, within BWI76_RS23700 at 4948.120 kb on + strand, within BWI76_RS23700 at 4948.368 kb on - strand at 4948.502 kb on + strand, within BWI76_RS23705 at 4948.657 kb on + strand, within BWI76_RS23705 at 4949.140 kb on + strand at 4949.173 kb on - strand, within BWI76_RS23710 at 4949.429 kb on - strand, within BWI76_RS23710 at 4949.480 kb on + strand, within BWI76_RS23710 at 4949.754 kb on - strand, within BWI76_RS23710 at 4949.876 kb on + strand, within BWI76_RS23710 at 4950.029 kb on + strand, within BWI76_RS23710
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Mixed culture; Pseudomonas simiae WCS417 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x remove 4,947,527 + BWI76_RS23700 0.52 +1.1 4,947,527 + BWI76_RS23700 0.52 +0.1 4,947,535 - BWI76_RS23700 0.52 -1.1 4,947,686 - BWI76_RS23700 0.62 -0.4 4,947,728 + BWI76_RS23700 0.64 -1.2 4,947,760 + BWI76_RS23700 0.66 -1.5 4,947,808 - BWI76_RS23700 0.69 +2.1 4,948,120 + BWI76_RS23700 0.89 +0.2 4,948,368 - +0.8 4,948,502 + BWI76_RS23705 0.27 +0.7 4,948,657 + BWI76_RS23705 0.48 +1.7 4,949,140 + +0.9 4,949,173 - BWI76_RS23710 0.10 +0.8 4,949,429 - BWI76_RS23710 0.32 +0.2 4,949,480 + BWI76_RS23710 0.36 +0.3 4,949,754 - BWI76_RS23710 0.59 +0.7 4,949,876 + BWI76_RS23710 0.70 +0.3 4,950,029 + BWI76_RS23710 0.82 +0.4
Or see this region's nucleotide sequence