Experiment: RCH2_defined_noCarbon with Mixed culture; Pseudomonas simiae WCS417 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS22955 and BWI76_RS22960 are separated by 353 nucleotides BWI76_RS22960 and BWI76_RS22965 are separated by 198 nucleotides BWI76_RS22965 and BWI76_RS22970 overlap by 1 nucleotides BWI76_RS22970 and BWI76_RS22975 are separated by 139 nucleotides
BWI76_RS22955: BWI76_RS22955 - transcriptional regulator GcvA, at 4,792,721 to 4,793,638
_RS22955
BWI76_RS22960: BWI76_RS22960 - YgdI/YgdR family lipoprotein, at 4,793,992 to 4,794,216
_RS22960
BWI76_RS22965: BWI76_RS22965 - cysteine sulfinate desulfinase, at 4,794,415 to 4,795,620
_RS22965
BWI76_RS22970: BWI76_RS22970 - cysteine desulfurase, sulfur acceptor subunit CsdE, at 4,795,620 to 4,796,060
_RS22970
BWI76_RS22975: BWI76_RS22975 - tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA, at 4,796,200 to 4,797,009
_RS22975
Position (kb) 4794
4795
4796 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4793.485 kb on + strand, within BWI76_RS22955 at 4793.485 kb on + strand, within BWI76_RS22955 at 4793.636 kb on - strand at 4793.832 kb on + strand at 4793.923 kb on - strand at 4794.029 kb on + strand, within BWI76_RS22960 at 4794.168 kb on + strand, within BWI76_RS22960 at 4794.176 kb on - strand, within BWI76_RS22960 at 4794.266 kb on + strand at 4794.269 kb on - strand at 4794.422 kb on + strand at 4794.714 kb on - strand, within BWI76_RS22965 at 4794.807 kb on + strand, within BWI76_RS22965 at 4794.823 kb on - strand, within BWI76_RS22965 at 4794.904 kb on - strand, within BWI76_RS22965 at 4795.425 kb on + strand, within BWI76_RS22965 at 4795.485 kb on - strand, within BWI76_RS22965 at 4795.627 kb on + strand at 4795.683 kb on - strand, within BWI76_RS22970 at 4796.063 kb on - strand at 4796.075 kb on + strand at 4796.151 kb on + strand at 4796.421 kb on - strand, within BWI76_RS22975 at 4796.438 kb on + strand, within BWI76_RS22975
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Mixed culture; Pseudomonas simiae WCS417 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x remove 4,793,485 + BWI76_RS22955 0.83 -0.2 4,793,485 + BWI76_RS22955 0.83 -0.2 4,793,636 - +0.9 4,793,832 + +0.4 4,793,923 - +2.0 4,794,029 + BWI76_RS22960 0.16 -1.3 4,794,168 + BWI76_RS22960 0.78 +0.9 4,794,176 - BWI76_RS22960 0.82 -0.2 4,794,266 + -2.1 4,794,269 - +0.3 4,794,422 + +2.3 4,794,714 - BWI76_RS22965 0.25 +0.7 4,794,807 + BWI76_RS22965 0.33 -0.3 4,794,823 - BWI76_RS22965 0.34 +1.4 4,794,904 - BWI76_RS22965 0.41 +1.4 4,795,425 + BWI76_RS22965 0.84 +0.3 4,795,485 - BWI76_RS22965 0.89 -1.2 4,795,627 + +0.1 4,795,683 - BWI76_RS22970 0.14 -1.6 4,796,063 - -1.0 4,796,075 + +0.2 4,796,151 + -0.8 4,796,421 - BWI76_RS22975 0.27 -0.7 4,796,438 + BWI76_RS22975 0.29 +0.7
Or see this region's nucleotide sequence