Experiment: RCH2_defined_noCarbon with Mixed culture; Pseudomonas simiae WCS417 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS11670 and BWI76_RS11675 overlap by 4 nucleotides BWI76_RS11675 and BWI76_RS11680 overlap by 4 nucleotides
BWI76_RS11670: BWI76_RS11670 - Succinylornithine transaminase (EC 2.6.1.81) (from data) , at 2,454,861 to 2,456,081
_RS11670
BWI76_RS11675: BWI76_RS11675 - arginine N-succinyltransferase, at 2,456,078 to 2,457,112
_RS11675
BWI76_RS11680: BWI76_RS11680 - succinylglutamate-semialdehyde dehydrogenase, at 2,457,109 to 2,458,587
_RS11680
Position (kb)
2456
2457
2458 Strain fitness (log2 ratio)
-1
0
1
2 at 2455.110 kb on - strand, within BWI76_RS11670 at 2455.770 kb on + strand, within BWI76_RS11670 at 2455.814 kb on + strand, within BWI76_RS11670 at 2455.817 kb on - strand, within BWI76_RS11670 at 2455.869 kb on - strand, within BWI76_RS11670 at 2455.910 kb on + strand, within BWI76_RS11670 at 2455.910 kb on + strand, within BWI76_RS11670 at 2455.910 kb on + strand, within BWI76_RS11670 at 2455.910 kb on + strand, within BWI76_RS11670 at 2455.910 kb on + strand, within BWI76_RS11670 at 2456.367 kb on + strand, within BWI76_RS11675 at 2456.375 kb on + strand, within BWI76_RS11675 at 2456.997 kb on - strand, within BWI76_RS11675 at 2457.686 kb on + strand, within BWI76_RS11680 at 2457.686 kb on + strand, within BWI76_RS11680 at 2457.694 kb on - strand, within BWI76_RS11680
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Mixed culture; Pseudomonas simiae WCS417 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x remove 2,455,110 - BWI76_RS11670 0.20 +0.8 2,455,770 + BWI76_RS11670 0.74 +1.2 2,455,814 + BWI76_RS11670 0.78 +0.2 2,455,817 - BWI76_RS11670 0.78 +0.1 2,455,869 - BWI76_RS11670 0.83 +0.2 2,455,910 + BWI76_RS11670 0.86 +0.5 2,455,910 + BWI76_RS11670 0.86 +0.5 2,455,910 + BWI76_RS11670 0.86 +0.8 2,455,910 + BWI76_RS11670 0.86 -0.5 2,455,910 + BWI76_RS11670 0.86 -0.2 2,456,367 + BWI76_RS11675 0.28 +1.1 2,456,375 + BWI76_RS11675 0.29 +1.9 2,456,997 - BWI76_RS11675 0.89 +0.8 2,457,686 + BWI76_RS11680 0.39 +0.7 2,457,686 + BWI76_RS11680 0.39 +1.0 2,457,694 - BWI76_RS11680 0.40 +1.1
Or see this region's nucleotide sequence