Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS10350

Experiment: RCH2_defined_noCarbon with Mixed culture; Pseudomonas simiae WCS417 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	RCH2_defined_noCarbon with Mixed culture; Pseudomonas simiae WCS417 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x
2,190,942	+		BWI76_RS10345	0.21	+1.6
2,190,998	+		BWI76_RS10345	0.26	-1.0
2,191,131	+		BWI76_RS10345	0.38	+1.0
2,191,139	-		BWI76_RS10345	0.39	+0.0
2,191,139	-		BWI76_RS10345	0.39	+0.0
2,191,146	-		BWI76_RS10345	0.39	-1.3
2,191,151	-				-1.0
2,191,153	-		BWI76_RS10345	0.40	+0.0
2,191,155	+		BWI76_RS10345	0.40	+0.0
2,191,155	+		BWI76_RS10345	0.40	+1.0
2,191,155	+		BWI76_RS10345	0.40	-0.5
2,191,155	+		BWI76_RS10345	0.40	+1.0
2,191,155	+		BWI76_RS10345	0.40	+0.0
2,191,155	+		BWI76_RS10345	0.40	-1.5
2,191,155	+		BWI76_RS10345	0.40	-0.5
2,191,155	+		BWI76_RS10345	0.40	+1.0
2,191,163	-		BWI76_RS10345	0.41	-1.8
2,191,163	-		BWI76_RS10345	0.41	-0.3
2,191,163	-		BWI76_RS10345	0.41	+0.3
2,191,178	+		BWI76_RS10345	0.42	+0.8
2,191,178	+		BWI76_RS10345	0.42	-0.2
2,191,199	-		BWI76_RS10345	0.44	-1.0
2,191,211	+		BWI76_RS10345	0.45	+0.3
2,191,211	+		BWI76_RS10345	0.45	+0.0
2,191,219	-		BWI76_RS10345	0.46	-1.2
2,191,219	-				-0.5
2,191,232	+		BWI76_RS10345	0.47	-2.0
2,191,233	-		BWI76_RS10345	0.47	+1.0
2,191,233	-		BWI76_RS10345	0.47	+0.2
2,191,235	-		BWI76_RS10345	0.47	+0.7
2,191,242	+		BWI76_RS10345	0.48	-1.6
2,191,242	+		BWI76_RS10345	0.48	+0.0
2,191,243	+		BWI76_RS10345	0.48	+0.0
2,191,289	-		BWI76_RS10345	0.52	+0.8
2,191,289	-		BWI76_RS10345	0.52	-0.1
2,191,299	+		BWI76_RS10345	0.53	+1.0
2,191,299	+		BWI76_RS10345	0.53	+0.4
2,191,299	+		BWI76_RS10345	0.53	-1.1
2,191,299	+		BWI76_RS10345	0.53	-0.5
2,191,299	+		BWI76_RS10345	0.53	-0.5
2,191,299	+		BWI76_RS10345	0.53	-0.1
2,191,299	+		BWI76_RS10345	0.53	-2.0
2,191,299	+		BWI76_RS10345	0.53	-0.7
2,191,299	+		BWI76_RS10345	0.53	+0.0
2,191,299	+		BWI76_RS10345	0.53	-1.1
2,191,307	-				+1.0
2,191,307	-		BWI76_RS10345	0.54	+0.6
2,191,307	-				-0.5
2,191,307	-		BWI76_RS10345	0.54	+1.7
2,191,307	-				+1.0
2,191,307	-		BWI76_RS10345	0.54	-1.5
2,191,307	-		BWI76_RS10345	0.54	+0.8
2,191,307	-		BWI76_RS10345	0.54	+0.6
2,191,307	-		BWI76_RS10345	0.54	-1.2
2,191,326	+		BWI76_RS10345	0.55	+0.6
2,191,326	+		BWI76_RS10345	0.55	+0.8
2,191,334	+		BWI76_RS10345	0.56	+1.0
2,191,334	+		BWI76_RS10345	0.56	+1.0
2,191,334	+		BWI76_RS10345	0.56	+1.0
2,191,334	+		BWI76_RS10345	0.56	+0.5
2,191,334	+		BWI76_RS10345	0.56	+0.0
2,191,334	+		BWI76_RS10345	0.56	+2.4
2,191,334	+		BWI76_RS10345	0.56	+1.0
2,191,334	+		BWI76_RS10345	0.56	-2.0
2,191,342	-		BWI76_RS10345	0.57	-0.2
2,191,342	-		BWI76_RS10345	0.57	-0.7
2,191,342	-		BWI76_RS10345	0.57	+0.9
2,191,342	-		BWI76_RS10345	0.57	-0.5
2,191,417	-		BWI76_RS10345	0.63	-2.7
2,191,452	+				+1.0
2,191,496	+		BWI76_RS10345	0.70	-0.5
2,191,496	+		BWI76_RS10345	0.70	+1.0
2,191,496	+		BWI76_RS10345	0.70	+0.0
2,191,496	+		BWI76_RS10345	0.70	-1.5
2,191,496	+		BWI76_RS10345	0.70	-1.8
2,191,496	+		BWI76_RS10345	0.70	-2.0
2,191,496	+		BWI76_RS10345	0.70	+1.6
2,191,496	+		BWI76_RS10345	0.70	+1.0
2,191,496	+		BWI76_RS10345	0.70	-1.3
2,191,504	-		BWI76_RS10345	0.71	-0.4
2,191,504	-		BWI76_RS10345	0.71	-2.0
2,191,504	-		BWI76_RS10345	0.71	+0.0
2,191,504	-		BWI76_RS10345	0.71	+0.0
2,191,504	-		BWI76_RS10345	0.71	-0.5
2,191,504	-		BWI76_RS10345	0.71	+3.0
2,191,504	-		BWI76_RS10345	0.71	-1.0
2,191,504	-		BWI76_RS10345	0.71	-0.3
2,191,504	-		BWI76_RS10345	0.71	+0.8
2,191,504	-		BWI76_RS10345	0.71	+2.3
2,191,504	-		BWI76_RS10345	0.71	-0.8
2,191,504	-				+1.7
2,191,504	-		BWI76_RS10345	0.71	-0.5
2,191,504	-		BWI76_RS10345	0.71	-0.5
2,191,504	-				-0.5
2,191,504	-		BWI76_RS10345	0.71	-0.5
2,191,506	+		BWI76_RS10345	0.71	-0.5
2,191,511	+		BWI76_RS10345	0.71	-2.3
2,191,512	+		BWI76_RS10345	0.71	+0.4
2,191,514	-		BWI76_RS10345	0.72	+0.3
2,191,536	+		BWI76_RS10345	0.74	+0.0
2,191,536	+		BWI76_RS10345	0.74	+0.5
2,191,536	+		BWI76_RS10345	0.74	+2.0
2,191,539	-		BWI76_RS10345	0.74	-0.2
2,191,542	-				+1.0
2,191,544	-		BWI76_RS10345	0.74	-2.1
2,191,544	-		BWI76_RS10345	0.74	-1.3
2,191,544	-		BWI76_RS10345	0.74	+0.0
2,191,549	+		BWI76_RS10345	0.75	-1.6
2,191,591	+		BWI76_RS10345	0.78	+1.0
2,191,689	-		BWI76_RS10345	0.87	-0.5
2,191,690	-		BWI76_RS10345	0.87	+0.0
2,191,700	-		BWI76_RS10345	0.88	+1.0
2,191,700	-		BWI76_RS10345	0.88	-1.3
2,191,708	+		BWI76_RS10345	0.89	-1.3
2,191,756	+				-2.3
2,191,761	+				-0.5
2,191,761	+				-0.1
2,191,764	-				-2.0
2,191,764	-				-1.3
2,191,771	+				-1.5
2,191,774	-				-0.5
2,191,778	+				+0.0
2,191,778	+				+1.0
2,191,779	-				+1.0
2,191,809	+				-1.0
2,191,821	+				-1.0
2,191,821	+				+0.0
2,191,821	+				-0.8
2,191,821	+				+0.5
2,191,821	+				-0.5
2,191,821	+				+0.0
2,191,823	-				-1.5
2,191,829	-				-1.8
2,191,829	-				+1.0
2,191,835	+				-1.5
2,191,836	+				+0.8
2,191,843	+				-1.8
2,191,956	+				+1.0
2,191,958	-				-0.5
2,191,963	+				-1.5
2,191,964	-				-0.5
2,191,965	-				+0.4
2,191,969	+				-1.3
2,191,971	-				+1.0
2,191,971	-				+0.6
2,191,971	-				+1.0
2,192,049	+		BWI76_RS10350	0.18	-1.0
2,192,066	+		BWI76_RS10350	0.20	-0.5
2,192,115	+		BWI76_RS10350	0.26	-1.1
2,192,118	-		BWI76_RS10350	0.26	+0.0
2,192,123	-		BWI76_RS10350	0.27	-1.8
2,192,161	+		BWI76_RS10350	0.31	+0.3
2,192,204	+		BWI76_RS10350	0.36	-2.5
2,192,204	+		BWI76_RS10350	0.36	-1.5
2,192,212	-		BWI76_RS10350	0.36	-3.1
2,192,212	-		BWI76_RS10350	0.36	+1.0
2,192,273	+		BWI76_RS10350	0.43	+0.0
2,192,298	+		BWI76_RS10350	0.46	-2.1
2,192,298	+		BWI76_RS10350	0.46	-1.0
2,192,306	-		BWI76_RS10350	0.47	+0.0
2,192,306	-		BWI76_RS10350	0.47	-2.0
2,192,306	-		BWI76_RS10350	0.47	-0.3
2,192,319	+		BWI76_RS10350	0.48	-2.0
2,192,327	-		BWI76_RS10350	0.49	-1.0
2,192,359	-		BWI76_RS10350	0.53	+0.5
2,192,359	-		BWI76_RS10350	0.53	-0.5
2,192,361	+		BWI76_RS10350	0.53	+1.0
2,192,369	-		BWI76_RS10350	0.54	-1.3
2,192,422	-		BWI76_RS10350	0.60	-1.0
2,192,424	+		BWI76_RS10350	0.60	-0.3
2,192,481	+		BWI76_RS10350	0.66	+1.3
2,192,486	-		BWI76_RS10350	0.67	-1.0
2,192,493	+		BWI76_RS10350	0.68	+0.2
2,192,581	-		BWI76_RS10350	0.77	-1.4
2,192,581	-		BWI76_RS10350	0.77	-0.5
2,192,581	-		BWI76_RS10350	0.77	-2.2
2,192,808	-				+2.6
2,192,943	+				+0.0
2,192,965	+				-0.8
2,193,055	-				-1.4
2,193,139	-		BWI76_RS10355	0.13	-0.2
2,193,141	+		BWI76_RS10355	0.13	+0.3
2,193,149	-		BWI76_RS10355	0.14	+0.3
2,193,224	+		BWI76_RS10355	0.21	+0.0
2,193,241	-				+1.0
2,193,241	-		BWI76_RS10355	0.22	-0.6
2,193,399	+		BWI76_RS10355	0.37	+0.2
2,193,426	+		BWI76_RS10355	0.39	+0.1
2,193,548	+		BWI76_RS10355	0.50	-0.0
2,193,632	+		BWI76_RS10355	0.58	-0.0
2,193,632	+		BWI76_RS10355	0.58	+0.5