Experiment: RCH2_defined_noCarbon with Mixed culture; Pseudomonas simiae WCS417 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS08845 and BWI76_RS08850 overlap by 1 nucleotides BWI76_RS08850 and BWI76_RS08855 overlap by 4 nucleotides BWI76_RS08855 and BWI76_RS08860 are separated by 143 nucleotides
BWI76_RS08845: BWI76_RS08845 - hypothetical protein, at 1,862,159 to 1,863,127
_RS08845
BWI76_RS08850: BWI76_RS08850 - cardiolipin synthase B, at 1,863,127 to 1,864,371
_RS08850
BWI76_RS08855: BWI76_RS08855 - endonuclease/exonuclease/phosphatase, at 1,864,368 to 1,865,117
_RS08855
BWI76_RS08860: BWI76_RS08860 - hypothetical protein, at 1,865,261 to 1,865,671
_RS08860
Position (kb)
1863
1864
1865 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1862.127 kb on + strand at 1862.269 kb on - strand, within BWI76_RS08845 at 1862.541 kb on - strand, within BWI76_RS08845 at 1862.678 kb on - strand, within BWI76_RS08845 at 1862.710 kb on + strand, within BWI76_RS08845 at 1862.710 kb on + strand, within BWI76_RS08845 at 1862.756 kb on + strand, within BWI76_RS08845 at 1862.764 kb on - strand, within BWI76_RS08845 at 1862.839 kb on + strand, within BWI76_RS08845 at 1862.898 kb on - strand, within BWI76_RS08845 at 1862.910 kb on + strand, within BWI76_RS08845 at 1862.967 kb on + strand, within BWI76_RS08845 at 1862.967 kb on + strand, within BWI76_RS08845 at 1862.980 kb on - strand, within BWI76_RS08845 at 1863.314 kb on + strand, within BWI76_RS08850 at 1863.349 kb on + strand, within BWI76_RS08850 at 1863.499 kb on - strand, within BWI76_RS08850 at 1864.152 kb on + strand, within BWI76_RS08850 at 1864.207 kb on - strand, within BWI76_RS08850 at 1864.490 kb on - strand, within BWI76_RS08855 at 1864.572 kb on - strand, within BWI76_RS08855 at 1864.634 kb on + strand, within BWI76_RS08855
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Mixed culture; Pseudomonas simiae WCS417 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x remove 1,862,127 + +0.5 1,862,269 - BWI76_RS08845 0.11 -0.2 1,862,541 - BWI76_RS08845 0.39 -2.0 1,862,678 - BWI76_RS08845 0.54 -0.0 1,862,710 + BWI76_RS08845 0.57 +0.0 1,862,710 + BWI76_RS08845 0.57 +0.2 1,862,756 + BWI76_RS08845 0.62 -0.5 1,862,764 - BWI76_RS08845 0.62 +0.4 1,862,839 + BWI76_RS08845 0.70 -0.6 1,862,898 - BWI76_RS08845 0.76 +1.3 1,862,910 + BWI76_RS08845 0.78 +0.4 1,862,967 + BWI76_RS08845 0.83 +1.8 1,862,967 + BWI76_RS08845 0.83 -0.1 1,862,980 - BWI76_RS08845 0.85 +0.0 1,863,314 + BWI76_RS08850 0.15 -0.2 1,863,349 + BWI76_RS08850 0.18 +0.8 1,863,499 - BWI76_RS08850 0.30 +0.4 1,864,152 + BWI76_RS08850 0.82 +0.3 1,864,207 - BWI76_RS08850 0.87 +1.1 1,864,490 - BWI76_RS08855 0.16 +0.7 1,864,572 - BWI76_RS08855 0.27 -0.4 1,864,634 + BWI76_RS08855 0.35 -0.6
Or see this region's nucleotide sequence