Experiment: RCH2_defined_noCarbon with Mixed culture; Pseudomonas simiae WCS417 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS02955 and BWI76_RS02960 are separated by 198 nucleotides BWI76_RS02960 and BWI76_RS02965 are separated by 52 nucleotides
BWI76_RS02955: BWI76_RS02955 - PTS system, cellobiose-specific IIC component, at 604,097 to 605,453
_RS02955
BWI76_RS02960: BWI76_RS02960 - glucohydrolase, at 605,652 to 607,307
_RS02960
BWI76_RS02965: BWI76_RS02965 - PTS trehalose transporter subunit IIBC, at 607,360 to 608,778
_RS02965
Position (kb) 605
606
607
608 Strain fitness (log2 ratio) -2
-1
0
1 at 604.697 kb on - strand, within BWI76_RS02955 at 604.762 kb on + strand, within BWI76_RS02955 at 604.842 kb on + strand, within BWI76_RS02955 at 604.842 kb on + strand, within BWI76_RS02955 at 604.850 kb on - strand, within BWI76_RS02955 at 604.886 kb on - strand, within BWI76_RS02955 at 604.922 kb on - strand, within BWI76_RS02955 at 604.975 kb on + strand, within BWI76_RS02955 at 605.048 kb on - strand, within BWI76_RS02955 at 605.309 kb on + strand, within BWI76_RS02955 at 605.422 kb on + strand at 605.455 kb on + strand at 605.597 kb on + strand at 605.604 kb on + strand at 605.604 kb on + strand at 605.636 kb on - strand at 605.690 kb on + strand at 607.490 kb on + strand at 607.733 kb on + strand, within BWI76_RS02965 at 607.813 kb on + strand, within BWI76_RS02965 at 607.883 kb on - strand at 607.907 kb on + strand, within BWI76_RS02965 at 607.912 kb on + strand, within BWI76_RS02965 at 607.915 kb on - strand, within BWI76_RS02965 at 608.178 kb on + strand, within BWI76_RS02965
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Mixed culture; Pseudomonas simiae WCS417 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x remove 604,697 - BWI76_RS02955 0.44 +0.4 604,762 + BWI76_RS02955 0.49 +1.1 604,842 + BWI76_RS02955 0.55 +0.7 604,842 + BWI76_RS02955 0.55 +0.1 604,850 - BWI76_RS02955 0.55 -0.5 604,886 - BWI76_RS02955 0.58 -0.2 604,922 - BWI76_RS02955 0.61 +1.4 604,975 + BWI76_RS02955 0.65 +0.5 605,048 - BWI76_RS02955 0.70 +0.2 605,309 + BWI76_RS02955 0.89 +0.9 605,422 + -0.0 605,455 + +0.3 605,597 + +0.2 605,604 + +1.1 605,604 + +0.1 605,636 - -0.2 605,690 + +0.2 607,490 + -0.4 607,733 + BWI76_RS02965 0.26 +0.2 607,813 + BWI76_RS02965 0.32 +0.1 607,883 - +0.8 607,907 + BWI76_RS02965 0.39 -0.1 607,912 + BWI76_RS02965 0.39 +0.2 607,915 - BWI76_RS02965 0.39 -0.5 608,178 + BWI76_RS02965 0.58 -2.3
Or see this region's nucleotide sequence