Experiment: RCH2_defined_noCarbon with Mixed culture; Pseudomonas simiae WCS417 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS02275 and BWI76_RS02280 are separated by 115 nucleotides BWI76_RS02280 and BWI76_RS02285 are separated by 145 nucleotides BWI76_RS02285 and BWI76_RS02290 are separated by 34 nucleotides BWI76_RS02290 and BWI76_RS02295 are separated by 99 nucleotides
BWI76_RS02275: BWI76_RS02275 - TetR family transcriptional regulator, at 467,579 to 468,175
_RS02275
BWI76_RS02280: BWI76_RS02280 - NAD(P)H dehydrogenase (quinone), at 468,291 to 468,878
_RS02280
BWI76_RS02285: BWI76_RS02285 - hypothetical protein, at 469,024 to 469,419
_RS02285
BWI76_RS02290: BWI76_RS02290 - hypothetical protein, at 469,454 to 470,263
_RS02290
BWI76_RS02295: BWI76_RS02295 - glycosyl transferase family 1, at 470,363 to 472,585
_RS02295
Position (kb) 469
470 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 468.144 kb on - strand at 468.151 kb on - strand at 468.320 kb on + strand at 468.351 kb on - strand, within BWI76_RS02280 at 468.483 kb on - strand, within BWI76_RS02280 at 468.504 kb on - strand, within BWI76_RS02280 at 468.592 kb on + strand, within BWI76_RS02280 at 468.616 kb on + strand, within BWI76_RS02280 at 468.661 kb on - strand, within BWI76_RS02280 at 468.714 kb on - strand, within BWI76_RS02280 at 468.729 kb on - strand, within BWI76_RS02280 at 468.770 kb on + strand, within BWI76_RS02280 at 468.798 kb on - strand, within BWI76_RS02280 at 468.806 kb on - strand, within BWI76_RS02280 at 468.808 kb on + strand, within BWI76_RS02280 at 468.811 kb on - strand, within BWI76_RS02280 at 468.831 kb on - strand at 468.845 kb on - strand at 468.867 kb on + strand at 468.867 kb on - strand at 468.887 kb on + strand at 468.916 kb on + strand at 468.916 kb on + strand at 468.917 kb on + strand at 468.917 kb on + strand at 468.917 kb on + strand at 468.917 kb on + strand at 468.924 kb on - strand at 468.924 kb on - strand at 468.926 kb on + strand at 468.926 kb on + strand at 468.934 kb on - strand at 468.986 kb on - strand at 468.986 kb on - strand at 468.988 kb on - strand at 469.029 kb on - strand at 469.035 kb on + strand at 469.053 kb on + strand at 469.059 kb on + strand at 469.059 kb on + strand at 469.059 kb on + strand at 469.059 kb on + strand at 469.059 kb on + strand at 469.059 kb on + strand at 469.061 kb on - strand at 469.067 kb on - strand, within BWI76_RS02285 at 469.067 kb on - strand, within BWI76_RS02285 at 469.067 kb on - strand, within BWI76_RS02285 at 469.067 kb on - strand, within BWI76_RS02285 at 469.067 kb on - strand, within BWI76_RS02285 at 469.067 kb on - strand, within BWI76_RS02285 at 469.067 kb on - strand, within BWI76_RS02285 at 469.067 kb on - strand, within BWI76_RS02285 at 469.069 kb on - strand, within BWI76_RS02285 at 469.244 kb on + strand, within BWI76_RS02285 at 469.275 kb on + strand, within BWI76_RS02285 at 469.277 kb on + strand, within BWI76_RS02285 at 469.277 kb on + strand, within BWI76_RS02285 at 469.277 kb on + strand, within BWI76_RS02285 at 469.277 kb on + strand, within BWI76_RS02285 at 469.277 kb on + strand, within BWI76_RS02285 at 469.353 kb on - strand, within BWI76_RS02285 at 469.372 kb on + strand, within BWI76_RS02285 at 469.372 kb on + strand, within BWI76_RS02285 at 469.372 kb on + strand, within BWI76_RS02285 at 469.372 kb on + strand, within BWI76_RS02285 at 469.372 kb on + strand, within BWI76_RS02285 at 469.372 kb on + strand, within BWI76_RS02285 at 469.372 kb on + strand, within BWI76_RS02285 at 469.372 kb on + strand, within BWI76_RS02285 at 469.408 kb on - strand at 469.411 kb on - strand at 469.533 kb on + strand at 469.542 kb on - strand, within BWI76_RS02290 at 469.542 kb on - strand, within BWI76_RS02290 at 469.542 kb on - strand, within BWI76_RS02290 at 469.599 kb on - strand, within BWI76_RS02290 at 469.608 kb on + strand, within BWI76_RS02290 at 469.608 kb on + strand at 469.608 kb on + strand, within BWI76_RS02290 at 469.608 kb on + strand at 469.616 kb on - strand, within BWI76_RS02290 at 469.616 kb on - strand, within BWI76_RS02290 at 469.616 kb on - strand, within BWI76_RS02290 at 469.650 kb on - strand, within BWI76_RS02290 at 469.736 kb on - strand at 469.739 kb on + strand, within BWI76_RS02290 at 469.739 kb on + strand, within BWI76_RS02290 at 469.783 kb on + strand, within BWI76_RS02290 at 469.791 kb on - strand, within BWI76_RS02290 at 469.791 kb on - strand, within BWI76_RS02290 at 469.795 kb on + strand, within BWI76_RS02290 at 469.803 kb on - strand, within BWI76_RS02290 at 469.819 kb on + strand, within BWI76_RS02290 at 469.834 kb on - strand, within BWI76_RS02290 at 469.841 kb on - strand, within BWI76_RS02290 at 469.841 kb on - strand, within BWI76_RS02290 at 469.843 kb on - strand, within BWI76_RS02290 at 469.855 kb on + strand, within BWI76_RS02290 at 469.855 kb on + strand, within BWI76_RS02290 at 469.863 kb on - strand at 469.958 kb on - strand, within BWI76_RS02290 at 469.958 kb on - strand, within BWI76_RS02290 at 469.965 kb on + strand, within BWI76_RS02290 at 469.965 kb on + strand, within BWI76_RS02290 at 470.018 kb on + strand, within BWI76_RS02290 at 470.025 kb on + strand, within BWI76_RS02290 at 470.025 kb on + strand, within BWI76_RS02290 at 470.025 kb on + strand, within BWI76_RS02290 at 470.025 kb on + strand, within BWI76_RS02290 at 470.025 kb on + strand, within BWI76_RS02290 at 470.025 kb on + strand, within BWI76_RS02290 at 470.025 kb on + strand, within BWI76_RS02290 at 470.025 kb on + strand, within BWI76_RS02290 at 470.025 kb on + strand, within BWI76_RS02290 at 470.025 kb on + strand, within BWI76_RS02290 at 470.025 kb on + strand, within BWI76_RS02290 at 470.025 kb on + strand, within BWI76_RS02290 at 470.025 kb on + strand, within BWI76_RS02290 at 470.025 kb on + strand, within BWI76_RS02290 at 470.025 kb on + strand, within BWI76_RS02290 at 470.025 kb on + strand, within BWI76_RS02290 at 470.025 kb on + strand, within BWI76_RS02290 at 470.027 kb on + strand, within BWI76_RS02290 at 470.033 kb on - strand, within BWI76_RS02290 at 470.033 kb on - strand, within BWI76_RS02290 at 470.033 kb on - strand, within BWI76_RS02290 at 470.033 kb on - strand, within BWI76_RS02290 at 470.033 kb on - strand, within BWI76_RS02290 at 470.033 kb on - strand, within BWI76_RS02290 at 470.033 kb on - strand, within BWI76_RS02290 at 470.033 kb on - strand, within BWI76_RS02290 at 470.033 kb on - strand, within BWI76_RS02290 at 470.033 kb on - strand, within BWI76_RS02290 at 470.033 kb on - strand, within BWI76_RS02290 at 470.033 kb on - strand, within BWI76_RS02290 at 470.033 kb on - strand, within BWI76_RS02290 at 470.035 kb on - strand, within BWI76_RS02290 at 470.044 kb on + strand, within BWI76_RS02290 at 470.044 kb on + strand, within BWI76_RS02290 at 470.044 kb on + strand, within BWI76_RS02290 at 470.052 kb on - strand, within BWI76_RS02290 at 470.085 kb on + strand, within BWI76_RS02290 at 470.085 kb on + strand, within BWI76_RS02290 at 470.085 kb on + strand, within BWI76_RS02290 at 470.085 kb on + strand, within BWI76_RS02290 at 470.085 kb on + strand, within BWI76_RS02290 at 470.085 kb on + strand, within BWI76_RS02290 at 470.085 kb on + strand, within BWI76_RS02290 at 470.085 kb on + strand, within BWI76_RS02290 at 470.090 kb on - strand, within BWI76_RS02290 at 470.090 kb on - strand, within BWI76_RS02290 at 470.093 kb on + strand, within BWI76_RS02290 at 470.093 kb on - strand, within BWI76_RS02290 at 470.093 kb on - strand, within BWI76_RS02290 at 470.093 kb on - strand, within BWI76_RS02290 at 470.093 kb on - strand, within BWI76_RS02290 at 470.093 kb on - strand, within BWI76_RS02290 at 470.093 kb on - strand, within BWI76_RS02290 at 470.093 kb on - strand, within BWI76_RS02290 at 470.093 kb on - strand, within BWI76_RS02290 at 470.093 kb on - strand, within BWI76_RS02290 at 470.095 kb on + strand, within BWI76_RS02290 at 470.101 kb on - strand, within BWI76_RS02290 at 470.103 kb on + strand, within BWI76_RS02290 at 470.103 kb on + strand, within BWI76_RS02290 at 470.103 kb on + strand, within BWI76_RS02290 at 470.110 kb on + strand, within BWI76_RS02290 at 470.110 kb on + strand, within BWI76_RS02290 at 470.110 kb on + strand, within BWI76_RS02290 at 470.110 kb on + strand, within BWI76_RS02290 at 470.110 kb on + strand, within BWI76_RS02290 at 470.110 kb on + strand, within BWI76_RS02290 at 470.111 kb on - strand, within BWI76_RS02290 at 470.111 kb on - strand, within BWI76_RS02290 at 470.113 kb on - strand, within BWI76_RS02290 at 470.118 kb on - strand, within BWI76_RS02290 at 470.118 kb on - strand, within BWI76_RS02290 at 470.125 kb on - strand, within BWI76_RS02290 at 470.125 kb on - strand, within BWI76_RS02290 at 470.154 kb on + strand, within BWI76_RS02290 at 470.158 kb on + strand, within BWI76_RS02290 at 470.167 kb on - strand, within BWI76_RS02290 at 470.184 kb on + strand at 470.184 kb on + strand at 470.184 kb on + strand at 470.184 kb on + strand at 470.184 kb on + strand at 470.186 kb on - strand at 470.190 kb on + strand at 470.192 kb on - strand at 470.192 kb on - strand at 470.192 kb on - strand at 470.256 kb on - strand at 470.258 kb on + strand at 470.296 kb on - strand at 470.307 kb on - strand at 470.336 kb on + strand at 470.336 kb on + strand at 470.343 kb on + strand at 470.344 kb on - strand at 470.344 kb on - strand at 470.346 kb on + strand at 470.389 kb on + strand at 470.390 kb on + strand at 470.395 kb on + strand at 470.403 kb on - strand at 470.405 kb on + strand at 470.405 kb on + strand at 470.405 kb on + strand at 470.405 kb on + strand at 470.405 kb on + strand at 470.405 kb on + strand at 470.405 kb on + strand at 470.407 kb on - strand at 470.408 kb on - strand at 470.413 kb on - strand at 470.419 kb on + strand at 470.419 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Mixed culture; Pseudomonas simiae WCS417 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x remove 468,144 - +0.8 468,151 - +0.8 468,320 + +0.6 468,351 - BWI76_RS02280 0.10 +0.2 468,483 - BWI76_RS02280 0.33 +0.5 468,504 - BWI76_RS02280 0.36 +0.1 468,592 + BWI76_RS02280 0.51 -0.4 468,616 + BWI76_RS02280 0.55 -0.2 468,661 - BWI76_RS02280 0.63 -0.1 468,714 - BWI76_RS02280 0.72 -0.8 468,729 - BWI76_RS02280 0.74 +2.0 468,770 + BWI76_RS02280 0.81 -1.1 468,798 - BWI76_RS02280 0.86 -0.3 468,806 - BWI76_RS02280 0.88 -1.4 468,808 + BWI76_RS02280 0.88 +0.0 468,811 - BWI76_RS02280 0.88 -0.9 468,831 - -0.1 468,845 - +1.6 468,867 + -0.6 468,867 - +0.5 468,887 + -1.1 468,916 + -0.9 468,916 + +0.2 468,917 + -0.6 468,917 + -3.3 468,917 + -0.4 468,917 + +0.7 468,924 - -0.2 468,924 - -0.4 468,926 + +0.2 468,926 + +0.2 468,934 - -0.7 468,986 - -1.8 468,986 - -1.6 468,988 - -1.4 469,029 - -2.1 469,035 + -1.4 469,053 + +1.2 469,059 + -0.8 469,059 + +1.2 469,059 + +1.2 469,059 + -1.8 469,059 + -1.1 469,059 + +0.4 469,061 - +0.7 469,067 - BWI76_RS02285 0.11 -1.4 469,067 - BWI76_RS02285 0.11 -1.1 469,067 - BWI76_RS02285 0.11 -0.9 469,067 - BWI76_RS02285 0.11 +0.2 469,067 - BWI76_RS02285 0.11 +1.0 469,067 - BWI76_RS02285 0.11 -2.3 469,067 - BWI76_RS02285 0.11 -2.5 469,067 - BWI76_RS02285 0.11 +1.0 469,069 - BWI76_RS02285 0.11 +1.2 469,244 + BWI76_RS02285 0.56 -0.8 469,275 + BWI76_RS02285 0.63 -1.5 469,277 + BWI76_RS02285 0.64 -1.4 469,277 + BWI76_RS02285 0.64 -0.1 469,277 + BWI76_RS02285 0.64 -1.8 469,277 + BWI76_RS02285 0.64 -0.4 469,277 + BWI76_RS02285 0.64 -0.6 469,353 - BWI76_RS02285 0.83 -1.4 469,372 + BWI76_RS02285 0.88 +2.2 469,372 + BWI76_RS02285 0.88 -0.1 469,372 + BWI76_RS02285 0.88 +0.2 469,372 + BWI76_RS02285 0.88 -1.2 469,372 + BWI76_RS02285 0.88 -0.1 469,372 + BWI76_RS02285 0.88 +1.2 469,372 + BWI76_RS02285 0.88 -0.6 469,372 + BWI76_RS02285 0.88 -1.9 469,408 - -0.0 469,411 - -1.0 469,533 + -0.4 469,542 - BWI76_RS02290 0.11 +0.1 469,542 - BWI76_RS02290 0.11 +0.1 469,542 - BWI76_RS02290 0.11 -1.9 469,599 - BWI76_RS02290 0.18 +2.8 469,608 + BWI76_RS02290 0.19 -0.6 469,608 + +1.2 469,608 + BWI76_RS02290 0.19 +0.8 469,608 + +0.2 469,616 - BWI76_RS02290 0.20 -0.6 469,616 - BWI76_RS02290 0.20 -0.4 469,616 - BWI76_RS02290 0.20 -3.4 469,650 - BWI76_RS02290 0.24 -0.9 469,736 - -0.4 469,739 + BWI76_RS02290 0.35 -0.4 469,739 + BWI76_RS02290 0.35 -3.3 469,783 + BWI76_RS02290 0.41 +1.2 469,791 - BWI76_RS02290 0.42 -2.1 469,791 - BWI76_RS02290 0.42 -1.8 469,795 + BWI76_RS02290 0.42 +0.2 469,803 - BWI76_RS02290 0.43 -2.0 469,819 + BWI76_RS02290 0.45 -0.3 469,834 - BWI76_RS02290 0.47 +0.4 469,841 - BWI76_RS02290 0.48 +1.2 469,841 - BWI76_RS02290 0.48 -0.8 469,843 - BWI76_RS02290 0.48 -0.3 469,855 + BWI76_RS02290 0.50 +1.1 469,855 + BWI76_RS02290 0.50 +1.4 469,863 - +1.2 469,958 - BWI76_RS02290 0.62 -0.4 469,958 - BWI76_RS02290 0.62 -0.4 469,965 + BWI76_RS02290 0.63 +0.2 469,965 + BWI76_RS02290 0.63 -1.1 470,018 + BWI76_RS02290 0.70 +0.6 470,025 + BWI76_RS02290 0.70 +0.0 470,025 + BWI76_RS02290 0.70 +0.9 470,025 + BWI76_RS02290 0.70 -0.8 470,025 + BWI76_RS02290 0.70 -1.5 470,025 + BWI76_RS02290 0.70 +0.6 470,025 + BWI76_RS02290 0.70 -2.6 470,025 + BWI76_RS02290 0.70 -2.1 470,025 + BWI76_RS02290 0.70 +0.2 470,025 + BWI76_RS02290 0.70 -0.8 470,025 + BWI76_RS02290 0.70 -1.4 470,025 + BWI76_RS02290 0.70 -1.6 470,025 + BWI76_RS02290 0.70 +0.1 470,025 + BWI76_RS02290 0.70 -1.4 470,025 + BWI76_RS02290 0.70 -1.6 470,025 + BWI76_RS02290 0.70 -1.0 470,025 + BWI76_RS02290 0.70 -2.0 470,025 + BWI76_RS02290 0.70 -1.0 470,027 + BWI76_RS02290 0.71 -1.1 470,033 - BWI76_RS02290 0.71 +2.8 470,033 - BWI76_RS02290 0.71 -1.1 470,033 - BWI76_RS02290 0.71 -1.6 470,033 - BWI76_RS02290 0.71 +0.2 470,033 - BWI76_RS02290 0.71 +1.2 470,033 - BWI76_RS02290 0.71 +1.2 470,033 - BWI76_RS02290 0.71 +2.8 470,033 - BWI76_RS02290 0.71 +1.4 470,033 - BWI76_RS02290 0.71 -0.9 470,033 - BWI76_RS02290 0.71 -0.8 470,033 - BWI76_RS02290 0.71 -1.2 470,033 - BWI76_RS02290 0.71 -0.4 470,033 - BWI76_RS02290 0.71 -2.4 470,035 - BWI76_RS02290 0.72 -2.0 470,044 + BWI76_RS02290 0.73 +0.3 470,044 + BWI76_RS02290 0.73 -2.4 470,044 + BWI76_RS02290 0.73 +0.2 470,052 - BWI76_RS02290 0.74 +1.2 470,085 + BWI76_RS02290 0.78 +0.2 470,085 + BWI76_RS02290 0.78 +0.9 470,085 + BWI76_RS02290 0.78 -2.6 470,085 + BWI76_RS02290 0.78 -0.0 470,085 + BWI76_RS02290 0.78 -0.9 470,085 + BWI76_RS02290 0.78 +0.1 470,085 + BWI76_RS02290 0.78 +0.2 470,085 + BWI76_RS02290 0.78 -0.7 470,090 - BWI76_RS02290 0.79 +1.2 470,090 - BWI76_RS02290 0.79 -3.1 470,093 + BWI76_RS02290 0.79 -1.5 470,093 - BWI76_RS02290 0.79 +1.2 470,093 - BWI76_RS02290 0.79 -1.6 470,093 - BWI76_RS02290 0.79 -2.7 470,093 - BWI76_RS02290 0.79 -2.8 470,093 - BWI76_RS02290 0.79 -1.8 470,093 - BWI76_RS02290 0.79 -0.5 470,093 - BWI76_RS02290 0.79 +0.1 470,093 - BWI76_RS02290 0.79 -2.1 470,093 - BWI76_RS02290 0.79 -1.1 470,095 + BWI76_RS02290 0.79 -1.8 470,101 - BWI76_RS02290 0.80 -1.0 470,103 + BWI76_RS02290 0.80 +0.0 470,103 + BWI76_RS02290 0.80 +0.2 470,103 + BWI76_RS02290 0.80 -0.9 470,110 + BWI76_RS02290 0.81 -1.4 470,110 + BWI76_RS02290 0.81 -1.1 470,110 + BWI76_RS02290 0.81 +0.1 470,110 + BWI76_RS02290 0.81 -0.3 470,110 + BWI76_RS02290 0.81 -1.2 470,110 + BWI76_RS02290 0.81 +1.2 470,111 - BWI76_RS02290 0.81 +0.0 470,111 - BWI76_RS02290 0.81 +0.2 470,113 - BWI76_RS02290 0.81 -2.4 470,118 - BWI76_RS02290 0.82 +0.6 470,118 - BWI76_RS02290 0.82 +2.2 470,125 - BWI76_RS02290 0.83 -0.8 470,125 - BWI76_RS02290 0.83 -0.9 470,154 + BWI76_RS02290 0.86 -0.1 470,158 + BWI76_RS02290 0.87 -1.0 470,167 - BWI76_RS02290 0.88 +0.4 470,184 + +0.2 470,184 + +0.6 470,184 + -1.9 470,184 + +2.2 470,184 + +0.7 470,186 - +0.6 470,190 + -0.4 470,192 - +0.2 470,192 - -2.5 470,192 - -1.4 470,256 - -2.0 470,258 + -0.9 470,296 - -0.2 470,307 - +0.6 470,336 + -0.4 470,336 + +0.1 470,343 + +0.2 470,344 - -0.9 470,344 - +3.2 470,346 + +0.7 470,389 + +0.2 470,390 + +1.2 470,395 + -1.4 470,403 - -1.8 470,405 + +0.1 470,405 + -2.9 470,405 + +0.7 470,405 + -0.4 470,405 + +0.2 470,405 + -0.2 470,405 + +1.2 470,407 - -0.8 470,408 - -0.4 470,413 - -1.6 470,419 + +1.2 470,419 + +0.2
Or see this region's nucleotide sequence