Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS00600

Experiment: RCH2_defined_noCarbon with Mixed culture; Pseudomonas simiae WCS417 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS00595 and BWI76_RS00600 are separated by 106 nucleotidesBWI76_RS00600 and BWI76_RS00605 are separated by 114 nucleotides BWI76_RS00595: BWI76_RS00595 - MFS transporter, at 118,344 to 119,621 _RS00595 BWI76_RS00600: BWI76_RS00600 - LacI family transcriptional regulator, at 119,728 to 120,723 _RS00600 BWI76_RS00605: BWI76_RS00605 - alpha-galactosidase, at 120,838 to 122,961 _RS00605 Position (kb) 119 120 121Strain fitness (log2 ratio) -2 -1 0 1 2at 118.757 kb on - strand, within BWI76_RS00595at 118.914 kb on + strand, within BWI76_RS00595at 118.951 kb on + strand, within BWI76_RS00595at 118.970 kb on - strand, within BWI76_RS00595at 118.999 kb on - strand, within BWI76_RS00595at 119.012 kb on + strand, within BWI76_RS00595at 119.120 kb on + strand, within BWI76_RS00595at 119.151 kb on - strand, within BWI76_RS00595at 119.242 kb on - strand, within BWI76_RS00595at 119.259 kb on - strand, within BWI76_RS00595at 119.274 kb on + strand, within BWI76_RS00595at 119.435 kb on + strand, within BWI76_RS00595at 119.482 kb on - strand, within BWI76_RS00595at 119.850 kb on - strand, within BWI76_RS00600at 119.890 kb on - strand, within BWI76_RS00600at 120.058 kb on - strand, within BWI76_RS00600at 120.072 kb on - strand, within BWI76_RS00600at 120.072 kb on - strand, within BWI76_RS00600at 120.118 kb on - strand, within BWI76_RS00600at 120.418 kb on - strand, within BWI76_RS00600at 120.613 kb on + strand, within BWI76_RS00600at 121.130 kb on + strand, within BWI76_RS00605at 121.201 kb on + strand, within BWI76_RS00605at 121.222 kb on + strand, within BWI76_RS00605at 121.230 kb on - strand, within BWI76_RS00605at 121.284 kb on + strand, within BWI76_RS00605at 121.458 kb on + strand, within BWI76_RS00605at 121.644 kb on - strand, within BWI76_RS00605at 121.654 kb on - strand, within BWI76_RS00605at 121.720 kb on + strand, within BWI76_RS00605

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Per-strain Table

Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Mixed culture; Pseudomonas simiae WCS417 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x
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118,757 - BWI76_RS00595 0.32 -1.1
118,914 + BWI76_RS00595 0.45 +0.0
118,951 + BWI76_RS00595 0.47 +0.7
118,970 - BWI76_RS00595 0.49 -0.2
118,999 - BWI76_RS00595 0.51 -0.0
119,012 + BWI76_RS00595 0.52 +0.5
119,120 + BWI76_RS00595 0.61 +1.7
119,151 - BWI76_RS00595 0.63 +1.3
119,242 - BWI76_RS00595 0.70 +1.3
119,259 - BWI76_RS00595 0.72 +0.6
119,274 + BWI76_RS00595 0.73 -0.6
119,435 + BWI76_RS00595 0.85 -0.2
119,482 - BWI76_RS00595 0.89 +1.4
119,850 - BWI76_RS00600 0.12 +0.3
119,890 - BWI76_RS00600 0.16 -1.2
120,058 - BWI76_RS00600 0.33 -2.2
120,072 - BWI76_RS00600 0.35 +1.8
120,072 - BWI76_RS00600 0.35 -1.7
120,118 - BWI76_RS00600 0.39 -2.1
120,418 - BWI76_RS00600 0.69 -0.8
120,613 + BWI76_RS00600 0.89 -2.3
121,130 + BWI76_RS00605 0.14 -0.4
121,201 + BWI76_RS00605 0.17 -0.6
121,222 + BWI76_RS00605 0.18 -0.0
121,230 - BWI76_RS00605 0.18 -0.7
121,284 + BWI76_RS00605 0.21 +0.3
121,458 + BWI76_RS00605 0.29 -0.2
121,644 - BWI76_RS00605 0.38 +0.1
121,654 - BWI76_RS00605 0.38 +0.2
121,720 + BWI76_RS00605 0.42 +1.4

Or see this region's nucleotide sequence