Experiment: MoYLS4 with Chlorite 250uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU1073 and rpmH are separated by 203 nucleotides rpmH and rnpA are separated by 86 nucleotides rnpA and DVU1076 overlap by 4 nucleotides DVU1076 and yidC are separated by 7 nucleotides yidC and DVU1078 are separated by 38 nucleotides
DVU1073: DVU1073 - conserved domain protein (TIGR), at 1,177,463 to 1,178,389
DVU1073
DVU1074: rpmH - ribosomal protein L34 (TIGR), at 1,178,593 to 1,178,727
rpmH
DVU1075: rnpA - ribonuclease P protein component (TIGR), at 1,178,814 to 1,179,104
rnpA
DVU1076: DVU1076 - conserved hypothetical protein TIGR00278 (TIGR), at 1,179,101 to 1,179,361
DVU1076
DVU1077: yidC - inner membrane protein, 60 kDa (TIGR), at 1,179,369 to 1,180,973
yidC
DVU1078: DVU1078 - R3H domain protein (TIGR), at 1,181,012 to 1,182,304
DVU1078
Position (kb)
1179
1180
1181 Strain fitness (log2 ratio)
-2
-1
0
1 at 1178.373 kb on + strand at 1178.414 kb on + strand at 1178.454 kb on - strand at 1178.468 kb on + strand at 1179.062 kb on + strand, within rnpA at 1179.118 kb on - strand at 1179.311 kb on - strand, within DVU1076 at 1180.980 kb on + strand at 1181.051 kb on - strand at 1181.167 kb on + strand, within DVU1078 at 1181.167 kb on + strand, within DVU1078 at 1181.170 kb on - strand, within DVU1078 at 1181.188 kb on + strand, within DVU1078 at 1181.264 kb on + strand, within DVU1078 at 1181.336 kb on + strand, within DVU1078 at 1181.346 kb on - strand, within DVU1078 at 1181.432 kb on + strand, within DVU1078 at 1181.499 kb on - strand, within DVU1078 at 1181.499 kb on - strand, within DVU1078 at 1181.515 kb on + strand, within DVU1078 at 1181.634 kb on - strand, within DVU1078 at 1181.656 kb on - strand, within DVU1078 at 1181.656 kb on - strand, within DVU1078 at 1181.684 kb on + strand, within DVU1078 at 1181.826 kb on + strand, within DVU1078 at 1181.850 kb on + strand, within DVU1078 at 1181.852 kb on + strand, within DVU1078
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Chlorite 250uM remove 1,178,373 + -1.2 1,178,414 + -0.2 1,178,454 - -0.1 1,178,468 + +0.1 1,179,062 + rnpA DVU1075 0.85 -2.5 1,179,118 - -0.8 1,179,311 - DVU1076 0.80 -0.9 1,180,980 + -0.6 1,181,051 - -0.7 1,181,167 + DVU1078 0.12 -1.1 1,181,167 + DVU1078 0.12 -0.6 1,181,170 - DVU1078 0.12 -1.0 1,181,188 + DVU1078 0.14 -0.3 1,181,264 + DVU1078 0.19 -0.6 1,181,336 + DVU1078 0.25 -0.2 1,181,346 - DVU1078 0.26 -2.5 1,181,432 + DVU1078 0.32 -1.1 1,181,499 - DVU1078 0.38 -1.0 1,181,499 - DVU1078 0.38 -0.5 1,181,515 + DVU1078 0.39 -0.3 1,181,634 - DVU1078 0.48 -1.1 1,181,656 - DVU1078 0.50 -1.1 1,181,656 - DVU1078 0.50 +0.6 1,181,684 + DVU1078 0.52 -0.2 1,181,826 + DVU1078 0.63 -0.7 1,181,850 + DVU1078 0.65 -1.3 1,181,852 + DVU1078 0.65 -0.8
Or see this region's nucleotide sequence