Experiment: D-Glucose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc03834 and SMc03835 are separated by 130 nucleotides SMc03835 and SMc03836 are separated by 114 nucleotides SMc03836 and SMc03837 are separated by 22 nucleotides SMc03837 and SMc03838 overlap by 4 nucleotides
SMc03834: SMc03834 - pterin-4-alpha-carbinolamine dehydratase, at 3,500,713 to 3,501,027
SMc03834
SMc03835: SMc03835 - 2'-5' RNA ligase, at 3,501,158 to 3,501,745
SMc03835
SMc03836: SMc03836 - acyl-CoA thioesterase i protein, at 3,501,860 to 3,502,549
SMc03836
SMc03837: SMc03837 - ABC transporter ATP-binding protein, at 3,502,572 to 3,503,291
SMc03837
SMc03838: SMc03838 - hypothetical protein, at 3,503,288 to 3,505,879
SMc03838
Position (kb)
3501
3502
3503 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3500.938 kb on + strand, within SMc03834 at 3501.056 kb on + strand at 3501.056 kb on + strand at 3501.243 kb on + strand, within SMc03835 at 3501.244 kb on - strand, within SMc03835 at 3501.422 kb on + strand, within SMc03835 at 3501.422 kb on + strand, within SMc03835 at 3501.639 kb on + strand, within SMc03835 at 3501.812 kb on + strand at 3501.812 kb on + strand at 3501.813 kb on - strand at 3501.844 kb on - strand at 3501.917 kb on + strand at 3501.918 kb on - strand at 3501.918 kb on - strand at 3502.008 kb on + strand, within SMc03836 at 3502.472 kb on + strand, within SMc03836 at 3502.493 kb on + strand at 3502.558 kb on + strand at 3502.559 kb on - strand at 3502.655 kb on - strand, within SMc03837 at 3502.655 kb on - strand, within SMc03837 at 3502.989 kb on + strand, within SMc03837 at 3503.213 kb on - strand, within SMc03837 at 3503.414 kb on + strand at 3503.415 kb on - strand at 3503.417 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose (C) remove 3,500,938 + SMc03834 0.71 +0.4 3,501,056 + -0.3 3,501,056 + +0.8 3,501,243 + SMc03835 0.14 -2.0 3,501,244 - SMc03835 0.15 -0.1 3,501,422 + SMc03835 0.45 -0.6 3,501,422 + SMc03835 0.45 +0.1 3,501,639 + SMc03835 0.82 +0.6 3,501,812 + +0.6 3,501,812 + -1.6 3,501,813 - +0.2 3,501,844 - +1.9 3,501,917 + -0.1 3,501,918 - -2.2 3,501,918 - +0.3 3,502,008 + SMc03836 0.21 +0.9 3,502,472 + SMc03836 0.89 +2.6 3,502,493 + +0.1 3,502,558 + +0.1 3,502,559 - +1.8 3,502,655 - SMc03837 0.12 -2.7 3,502,655 - SMc03837 0.12 -0.1 3,502,989 + SMc03837 0.58 -0.3 3,503,213 - SMc03837 0.89 +0.0 3,503,414 + +0.3 3,503,415 - +1.5 3,503,417 - -0.5
Or see this region's nucleotide sequence