Strain Fitness in Sinorhizobium meliloti 1021 around SMc00976

Experiment: D-Glucose (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSMc00977 and SMc00976 are separated by 9 nucleotidesSMc00976 and SMc00975 are separated by 256 nucleotides SMc00977: SMc00977 - acyl-CoA dehydrogenase, at 960,794 to 962,575 SMc00977 SMc00976: SMc00976 - enoyl-CoA hydratase, at 962,585 to 963,337 SMc00976 SMc00975: SMc00975 - chemoreceptor methyl-accepting chemotaxis transmembrane protein, at 963,594 to 965,717 SMc00975 Position (kb) 962 963 964Strain fitness (log2 ratio) -2 -1 0 1at 961.592 kb on + strand, within SMc00977at 961.758 kb on - strand, within SMc00977at 961.892 kb on + strand, within SMc00977at 962.085 kb on - strand, within SMc00977at 962.115 kb on - strand, within SMc00977at 962.408 kb on + strandat 962.408 kb on + strandat 962.408 kb on + strandat 962.408 kb on + strandat 962.621 kb on + strandat 962.687 kb on + strand, within SMc00976at 962.688 kb on - strand, within SMc00976at 962.688 kb on - strand, within SMc00976at 963.335 kb on + strandat 963.394 kb on + strandat 963.394 kb on + strandat 963.395 kb on - strandat 963.395 kb on - strandat 963.421 kb on - strandat 963.421 kb on - strandat 963.705 kb on + strandat 963.706 kb on - strandat 963.706 kb on - strandat 963.707 kb on + strandat 963.922 kb on - strand, within SMc00975at 964.005 kb on + strand, within SMc00975at 964.051 kb on - strand, within SMc00975

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
remove
961,592 + SMc00977 0.45 +1.0
961,758 - SMc00977 0.54 -0.5
961,892 + SMc00977 0.62 -0.6
962,085 - SMc00977 0.72 +0.1
962,115 - SMc00977 0.74 +0.3
962,408 + +1.0
962,408 + -0.8
962,408 + +0.8
962,408 + -1.4
962,621 + +0.1
962,687 + SMc00976 0.14 -0.4
962,688 - SMc00976 0.14 -1.9
962,688 - SMc00976 0.14 -1.9
963,335 + +0.5
963,394 + +0.6
963,394 + -0.7
963,395 - -0.1
963,395 - +0.0
963,421 - +0.0
963,421 - +0.5
963,705 + -0.2
963,706 - -0.7
963,706 - -0.0
963,707 + -0.9
963,922 - SMc00975 0.15 -1.0
964,005 + SMc00975 0.19 +0.1
964,051 - SMc00975 0.22 -1.6

Or see this region's nucleotide sequence