Experiment: D-Glucose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00290 and SMc00291 are separated by 391 nucleotides SMc00291 and SMc00304 are separated by 161 nucleotides SMc00304 and SMc00305 are separated by 350 nucleotides SMc00305 and SMc00306 are separated by 181 nucleotides SMc00306 and SMc00292 are separated by 73 nucleotides
SMc00290: SMc00290 - lactoylglutathione lyase, at 1,859,795 to 1,860,235
SMc00290
SMc00291: SMc00291 - lipoprotein, at 1,860,627 to 1,861,946
SMc00291
SMc00304: SMc00304 - tRNA-Glu, at 1,862,108 to 1,862,183
SMc00304
SMc00305: SMc00305 - tRNA-Glu, at 1,862,534 to 1,862,608
SMc00305
SMc00306: SMc00306 - tRNA-Glu, at 1,862,790 to 1,862,865
SMc00306
SMc00292: SMc00292 - single-stranded-DNA-specific exonuclease, at 1,862,939 to 1,864,741
SMc00292
Position (kb)
1860
1861
1862 Strain fitness (log2 ratio)
-1
0
1
2 at 1859.700 kb on - strand at 1859.718 kb on + strand at 1859.718 kb on + strand at 1859.719 kb on - strand at 1859.719 kb on - strand at 1859.720 kb on + strand at 1859.720 kb on + strand at 1859.720 kb on + strand at 1859.721 kb on - strand at 1859.721 kb on - strand at 1859.759 kb on + strand at 1859.759 kb on + strand at 1859.760 kb on - strand at 1859.760 kb on - strand at 1859.760 kb on - strand at 1859.760 kb on - strand at 1859.761 kb on + strand at 1859.762 kb on - strand at 1859.762 kb on - strand at 1859.762 kb on - strand at 1859.801 kb on + strand at 1859.809 kb on + strand at 1859.809 kb on + strand at 1859.809 kb on + strand at 1859.809 kb on + strand at 1859.809 kb on + strand at 1859.810 kb on - strand at 1859.852 kb on + strand, within SMc00290 at 1859.987 kb on + strand, within SMc00290 at 1859.987 kb on + strand, within SMc00290 at 1859.988 kb on - strand, within SMc00290 at 1859.988 kb on - strand, within SMc00290 at 1859.989 kb on + strand, within SMc00290 at 1859.989 kb on + strand, within SMc00290 at 1859.989 kb on + strand, within SMc00290 at 1859.990 kb on - strand, within SMc00290 at 1859.990 kb on - strand, within SMc00290 at 1859.990 kb on - strand, within SMc00290 at 1859.990 kb on - strand, within SMc00290 at 1859.990 kb on - strand, within SMc00290 at 1860.008 kb on + strand, within SMc00290 at 1860.041 kb on + strand, within SMc00290 at 1860.055 kb on + strand, within SMc00290 at 1860.055 kb on + strand, within SMc00290 at 1860.055 kb on + strand, within SMc00290 at 1860.055 kb on + strand, within SMc00290 at 1860.056 kb on - strand, within SMc00290 at 1860.056 kb on - strand, within SMc00290 at 1860.059 kb on + strand, within SMc00290 at 1860.059 kb on + strand, within SMc00290 at 1860.059 kb on + strand, within SMc00290 at 1860.059 kb on + strand, within SMc00290 at 1860.059 kb on + strand, within SMc00290 at 1860.059 kb on + strand, within SMc00290 at 1860.060 kb on - strand, within SMc00290 at 1860.060 kb on - strand, within SMc00290 at 1860.367 kb on + strand at 1860.368 kb on - strand at 1860.368 kb on - strand at 1860.370 kb on - strand at 1860.424 kb on + strand at 1860.486 kb on - strand at 1860.487 kb on + strand at 1860.517 kb on - strand at 1860.556 kb on + strand at 1860.649 kb on - strand at 1861.053 kb on - strand, within SMc00291 at 1861.226 kb on - strand, within SMc00291 at 1861.483 kb on - strand, within SMc00291 at 1861.483 kb on - strand, within SMc00291 at 1861.483 kb on - strand, within SMc00291 at 1861.484 kb on + strand, within SMc00291 at 1861.484 kb on + strand, within SMc00291 at 1861.484 kb on + strand, within SMc00291 at 1861.485 kb on - strand, within SMc00291 at 1861.485 kb on - strand, within SMc00291 at 1861.485 kb on - strand, within SMc00291 at 1861.505 kb on + strand, within SMc00291 at 1861.506 kb on - strand, within SMc00291 at 1861.506 kb on - strand, within SMc00291 at 1861.819 kb on + strand at 1861.820 kb on - strand at 1861.866 kb on + strand at 1861.875 kb on - strand at 1861.958 kb on + strand at 1861.959 kb on - strand at 1862.045 kb on + strand at 1862.046 kb on - strand at 1862.046 kb on - strand at 1862.048 kb on - strand at 1862.063 kb on - strand at 1862.195 kb on + strand at 1862.195 kb on + strand at 1862.197 kb on + strand at 1862.198 kb on - strand at 1862.198 kb on - strand at 1862.198 kb on - strand at 1862.208 kb on - strand at 1862.253 kb on + strand at 1862.253 kb on + strand at 1862.338 kb on + strand at 1862.339 kb on - strand at 1862.339 kb on - strand at 1862.356 kb on - strand at 1862.382 kb on - strand at 1862.382 kb on - strand at 1862.382 kb on - strand at 1862.510 kb on + strand at 1862.511 kb on - strand at 1862.511 kb on - strand at 1862.511 kb on - strand at 1862.511 kb on - strand at 1862.732 kb on + strand at 1862.732 kb on + strand at 1862.734 kb on + strand at 1862.735 kb on - strand at 1862.735 kb on - strand at 1862.735 kb on - strand at 1862.896 kb on + strand at 1862.944 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose (C) remove 1,859,700 - +1.1 1,859,718 + -0.4 1,859,718 + -0.2 1,859,719 - -0.0 1,859,719 - -0.2 1,859,720 + +0.4 1,859,720 + +0.4 1,859,720 + -0.3 1,859,721 - +0.4 1,859,721 - -0.7 1,859,759 + +1.6 1,859,759 + +0.0 1,859,760 - -0.1 1,859,760 - -0.3 1,859,760 - -0.3 1,859,760 - -0.2 1,859,761 + -0.1 1,859,762 - -1.2 1,859,762 - +0.4 1,859,762 - +0.7 1,859,801 + +0.4 1,859,809 + -0.4 1,859,809 + +0.1 1,859,809 + -0.8 1,859,809 + -0.6 1,859,809 + -0.8 1,859,810 - +0.3 1,859,852 + SMc00290 0.13 -0.9 1,859,987 + SMc00290 0.44 -0.7 1,859,987 + SMc00290 0.44 -1.1 1,859,988 - SMc00290 0.44 +0.9 1,859,988 - SMc00290 0.44 +1.4 1,859,989 + SMc00290 0.44 +0.6 1,859,989 + SMc00290 0.44 -0.1 1,859,989 + SMc00290 0.44 +0.4 1,859,990 - SMc00290 0.44 +0.0 1,859,990 - SMc00290 0.44 -0.1 1,859,990 - SMc00290 0.44 -0.0 1,859,990 - SMc00290 0.44 -1.1 1,859,990 - SMc00290 0.44 +0.3 1,860,008 + SMc00290 0.48 -0.7 1,860,041 + SMc00290 0.56 +0.4 1,860,055 + SMc00290 0.59 +1.5 1,860,055 + SMc00290 0.59 +0.4 1,860,055 + SMc00290 0.59 +0.4 1,860,055 + SMc00290 0.59 +1.5 1,860,056 - SMc00290 0.59 -0.1 1,860,056 - SMc00290 0.59 +2.4 1,860,059 + SMc00290 0.60 -1.1 1,860,059 + SMc00290 0.60 -1.1 1,860,059 + SMc00290 0.60 +0.6 1,860,059 + SMc00290 0.60 +0.9 1,860,059 + SMc00290 0.60 +0.5 1,860,059 + SMc00290 0.60 +0.0 1,860,060 - SMc00290 0.60 +0.1 1,860,060 - SMc00290 0.60 +0.4 1,860,367 + -0.5 1,860,368 - +0.4 1,860,368 - -0.3 1,860,370 - -0.2 1,860,424 + -0.5 1,860,486 - +0.9 1,860,487 + -0.5 1,860,517 - -0.2 1,860,556 + -0.1 1,860,649 - +0.4 1,861,053 - SMc00291 0.32 -0.1 1,861,226 - SMc00291 0.45 -0.2 1,861,483 - SMc00291 0.65 -0.8 1,861,483 - SMc00291 0.65 +0.5 1,861,483 - SMc00291 0.65 +0.5 1,861,484 + SMc00291 0.65 -0.3 1,861,484 + SMc00291 0.65 -0.2 1,861,484 + SMc00291 0.65 -0.7 1,861,485 - SMc00291 0.65 -0.5 1,861,485 - SMc00291 0.65 +0.0 1,861,485 - SMc00291 0.65 -0.8 1,861,505 + SMc00291 0.67 -0.9 1,861,506 - SMc00291 0.67 -1.3 1,861,506 - SMc00291 0.67 +0.8 1,861,819 + +0.6 1,861,820 - +0.2 1,861,866 + -0.0 1,861,875 - +0.6 1,861,958 + +0.6 1,861,959 - -0.4 1,862,045 + +0.1 1,862,046 - -0.2 1,862,046 - -0.1 1,862,048 - -0.1 1,862,063 - -0.0 1,862,195 + +0.7 1,862,195 + -0.5 1,862,197 + -0.5 1,862,198 - -0.3 1,862,198 - -0.2 1,862,198 - -0.6 1,862,208 - +0.1 1,862,253 + +1.0 1,862,253 + -0.4 1,862,338 + +0.6 1,862,339 - -0.3 1,862,339 - +0.1 1,862,356 - -0.0 1,862,382 - +0.3 1,862,382 - +0.1 1,862,382 - +0.2 1,862,510 + -0.1 1,862,511 - +0.3 1,862,511 - +0.5 1,862,511 - +0.3 1,862,511 - +0.1 1,862,732 + -0.7 1,862,732 + -0.2 1,862,734 + -0.8 1,862,735 - -0.4 1,862,735 - -0.4 1,862,735 - +0.4 1,862,896 + +0.7 1,862,944 + -0.1
Or see this region's nucleotide sequence