Strain Fitness in Sinorhizobium meliloti 1021 around SMc00291

Experiment: D-Glucose (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSMc00290 and SMc00291 are separated by 391 nucleotidesSMc00291 and SMc00304 are separated by 161 nucleotidesSMc00304 and SMc00305 are separated by 350 nucleotidesSMc00305 and SMc00306 are separated by 181 nucleotidesSMc00306 and SMc00292 are separated by 73 nucleotides SMc00290: SMc00290 - lactoylglutathione lyase, at 1,859,795 to 1,860,235 SMc00290 SMc00291: SMc00291 - lipoprotein, at 1,860,627 to 1,861,946 SMc00291 SMc00304: SMc00304 - tRNA-Glu, at 1,862,108 to 1,862,183 SMc00304 SMc00305: SMc00305 - tRNA-Glu, at 1,862,534 to 1,862,608 SMc00305 SMc00306: SMc00306 - tRNA-Glu, at 1,862,790 to 1,862,865 SMc00306 SMc00292: SMc00292 - single-stranded-DNA-specific exonuclease, at 1,862,939 to 1,864,741 SMc00292 Position (kb) 1860 1861 1862Strain fitness (log2 ratio) -1 0 1 2at 1859.700 kb on - strandat 1859.718 kb on + strandat 1859.718 kb on + strandat 1859.719 kb on - strandat 1859.719 kb on - strandat 1859.720 kb on + strandat 1859.720 kb on + strandat 1859.720 kb on + strandat 1859.721 kb on - strandat 1859.721 kb on - strandat 1859.759 kb on + strandat 1859.759 kb on + strandat 1859.760 kb on - strandat 1859.760 kb on - strandat 1859.760 kb on - strandat 1859.760 kb on - strandat 1859.761 kb on + strandat 1859.762 kb on - strandat 1859.762 kb on - strandat 1859.762 kb on - strandat 1859.801 kb on + strandat 1859.809 kb on + strandat 1859.809 kb on + strandat 1859.809 kb on + strandat 1859.809 kb on + strandat 1859.809 kb on + strandat 1859.810 kb on - strandat 1859.852 kb on + strand, within SMc00290at 1859.987 kb on + strand, within SMc00290at 1859.987 kb on + strand, within SMc00290at 1859.988 kb on - strand, within SMc00290at 1859.988 kb on - strand, within SMc00290at 1859.989 kb on + strand, within SMc00290at 1859.989 kb on + strand, within SMc00290at 1859.989 kb on + strand, within SMc00290at 1859.990 kb on - strand, within SMc00290at 1859.990 kb on - strand, within SMc00290at 1859.990 kb on - strand, within SMc00290at 1859.990 kb on - strand, within SMc00290at 1859.990 kb on - strand, within SMc00290at 1860.008 kb on + strand, within SMc00290at 1860.041 kb on + strand, within SMc00290at 1860.055 kb on + strand, within SMc00290at 1860.055 kb on + strand, within SMc00290at 1860.055 kb on + strand, within SMc00290at 1860.055 kb on + strand, within SMc00290at 1860.056 kb on - strand, within SMc00290at 1860.056 kb on - strand, within SMc00290at 1860.059 kb on + strand, within SMc00290at 1860.059 kb on + strand, within SMc00290at 1860.059 kb on + strand, within SMc00290at 1860.059 kb on + strand, within SMc00290at 1860.059 kb on + strand, within SMc00290at 1860.059 kb on + strand, within SMc00290at 1860.060 kb on - strand, within SMc00290at 1860.060 kb on - strand, within SMc00290at 1860.367 kb on + strandat 1860.368 kb on - strandat 1860.368 kb on - strandat 1860.370 kb on - strandat 1860.424 kb on + strandat 1860.486 kb on - strandat 1860.487 kb on + strandat 1860.517 kb on - strandat 1860.556 kb on + strandat 1860.649 kb on - strandat 1861.053 kb on - strand, within SMc00291at 1861.226 kb on - strand, within SMc00291at 1861.483 kb on - strand, within SMc00291at 1861.483 kb on - strand, within SMc00291at 1861.483 kb on - strand, within SMc00291at 1861.484 kb on + strand, within SMc00291at 1861.484 kb on + strand, within SMc00291at 1861.484 kb on + strand, within SMc00291at 1861.485 kb on - strand, within SMc00291at 1861.485 kb on - strand, within SMc00291at 1861.485 kb on - strand, within SMc00291at 1861.505 kb on + strand, within SMc00291at 1861.506 kb on - strand, within SMc00291at 1861.506 kb on - strand, within SMc00291at 1861.819 kb on + strandat 1861.820 kb on - strandat 1861.866 kb on + strandat 1861.875 kb on - strandat 1861.958 kb on + strandat 1861.959 kb on - strandat 1862.045 kb on + strandat 1862.046 kb on - strandat 1862.046 kb on - strandat 1862.048 kb on - strandat 1862.063 kb on - strandat 1862.195 kb on + strandat 1862.195 kb on + strandat 1862.197 kb on + strandat 1862.198 kb on - strandat 1862.198 kb on - strandat 1862.198 kb on - strandat 1862.208 kb on - strandat 1862.253 kb on + strandat 1862.253 kb on + strandat 1862.338 kb on + strandat 1862.339 kb on - strandat 1862.339 kb on - strandat 1862.356 kb on - strandat 1862.382 kb on - strandat 1862.382 kb on - strandat 1862.382 kb on - strandat 1862.510 kb on + strandat 1862.511 kb on - strandat 1862.511 kb on - strandat 1862.511 kb on - strandat 1862.511 kb on - strandat 1862.732 kb on + strandat 1862.732 kb on + strandat 1862.734 kb on + strandat 1862.735 kb on - strandat 1862.735 kb on - strandat 1862.735 kb on - strandat 1862.896 kb on + strandat 1862.944 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
remove
1,859,700 - +1.1
1,859,718 + -0.4
1,859,718 + -0.2
1,859,719 - -0.0
1,859,719 - -0.2
1,859,720 + +0.4
1,859,720 + +0.4
1,859,720 + -0.3
1,859,721 - +0.4
1,859,721 - -0.7
1,859,759 + +1.6
1,859,759 + +0.0
1,859,760 - -0.1
1,859,760 - -0.3
1,859,760 - -0.3
1,859,760 - -0.2
1,859,761 + -0.1
1,859,762 - -1.2
1,859,762 - +0.4
1,859,762 - +0.7
1,859,801 + +0.4
1,859,809 + -0.4
1,859,809 + +0.1
1,859,809 + -0.8
1,859,809 + -0.6
1,859,809 + -0.8
1,859,810 - +0.3
1,859,852 + SMc00290 0.13 -0.9
1,859,987 + SMc00290 0.44 -0.7
1,859,987 + SMc00290 0.44 -1.1
1,859,988 - SMc00290 0.44 +0.9
1,859,988 - SMc00290 0.44 +1.4
1,859,989 + SMc00290 0.44 +0.6
1,859,989 + SMc00290 0.44 -0.1
1,859,989 + SMc00290 0.44 +0.4
1,859,990 - SMc00290 0.44 +0.0
1,859,990 - SMc00290 0.44 -0.1
1,859,990 - SMc00290 0.44 -0.0
1,859,990 - SMc00290 0.44 -1.1
1,859,990 - SMc00290 0.44 +0.3
1,860,008 + SMc00290 0.48 -0.7
1,860,041 + SMc00290 0.56 +0.4
1,860,055 + SMc00290 0.59 +1.5
1,860,055 + SMc00290 0.59 +0.4
1,860,055 + SMc00290 0.59 +0.4
1,860,055 + SMc00290 0.59 +1.5
1,860,056 - SMc00290 0.59 -0.1
1,860,056 - SMc00290 0.59 +2.4
1,860,059 + SMc00290 0.60 -1.1
1,860,059 + SMc00290 0.60 -1.1
1,860,059 + SMc00290 0.60 +0.6
1,860,059 + SMc00290 0.60 +0.9
1,860,059 + SMc00290 0.60 +0.5
1,860,059 + SMc00290 0.60 +0.0
1,860,060 - SMc00290 0.60 +0.1
1,860,060 - SMc00290 0.60 +0.4
1,860,367 + -0.5
1,860,368 - +0.4
1,860,368 - -0.3
1,860,370 - -0.2
1,860,424 + -0.5
1,860,486 - +0.9
1,860,487 + -0.5
1,860,517 - -0.2
1,860,556 + -0.1
1,860,649 - +0.4
1,861,053 - SMc00291 0.32 -0.1
1,861,226 - SMc00291 0.45 -0.2
1,861,483 - SMc00291 0.65 -0.8
1,861,483 - SMc00291 0.65 +0.5
1,861,483 - SMc00291 0.65 +0.5
1,861,484 + SMc00291 0.65 -0.3
1,861,484 + SMc00291 0.65 -0.2
1,861,484 + SMc00291 0.65 -0.7
1,861,485 - SMc00291 0.65 -0.5
1,861,485 - SMc00291 0.65 +0.0
1,861,485 - SMc00291 0.65 -0.8
1,861,505 + SMc00291 0.67 -0.9
1,861,506 - SMc00291 0.67 -1.3
1,861,506 - SMc00291 0.67 +0.8
1,861,819 + +0.6
1,861,820 - +0.2
1,861,866 + -0.0
1,861,875 - +0.6
1,861,958 + +0.6
1,861,959 - -0.4
1,862,045 + +0.1
1,862,046 - -0.2
1,862,046 - -0.1
1,862,048 - -0.1
1,862,063 - -0.0
1,862,195 + +0.7
1,862,195 + -0.5
1,862,197 + -0.5
1,862,198 - -0.3
1,862,198 - -0.2
1,862,198 - -0.6
1,862,208 - +0.1
1,862,253 + +1.0
1,862,253 + -0.4
1,862,338 + +0.6
1,862,339 - -0.3
1,862,339 - +0.1
1,862,356 - -0.0
1,862,382 - +0.3
1,862,382 - +0.1
1,862,382 - +0.2
1,862,510 + -0.1
1,862,511 - +0.3
1,862,511 - +0.5
1,862,511 - +0.3
1,862,511 - +0.1
1,862,732 + -0.7
1,862,732 + -0.2
1,862,734 + -0.8
1,862,735 - -0.4
1,862,735 - -0.4
1,862,735 - +0.4
1,862,896 + +0.7
1,862,944 + -0.1

Or see this region's nucleotide sequence