Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20904

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20903 and SM_b20904 are separated by 14 nucleotidesSM_b20904 and SM_b21712 are separated by 181 nucleotidesSM_b21712 and SM_b20905 are separated by 38 nucleotides SM_b20903: SM_b20903 - sugar uptake ABC transporter permease, at 1,312,839 to 1,314,200 _b20903 SM_b20904: SM_b20904 - sugar uptake ABC transporter ATP-binding protein, at 1,314,215 to 1,315,000 _b20904 SM_b21712: SM_b21712 - tRNA-Arg, at 1,315,182 to 1,315,258 _b21712 SM_b20905: SM_b20905 - transposase, at 1,315,297 to 1,316,469 _b20905 Position (kb) 1314 1315 1316Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1313.227 kb on - strand, within SM_b20903at 1313.227 kb on - strand, within SM_b20903at 1313.227 kb on - strand, within SM_b20903at 1313.570 kb on - strand, within SM_b20903at 1313.589 kb on + strand, within SM_b20903at 1313.589 kb on + strand, within SM_b20903at 1313.649 kb on + strand, within SM_b20903at 1313.650 kb on - strand, within SM_b20903at 1313.653 kb on - strand, within SM_b20903at 1313.653 kb on - strand, within SM_b20903at 1313.679 kb on + strand, within SM_b20903at 1313.680 kb on - strand, within SM_b20903at 1313.814 kb on + strand, within SM_b20903at 1313.988 kb on + strand, within SM_b20903at 1313.988 kb on + strand, within SM_b20903at 1313.988 kb on + strand, within SM_b20903at 1314.180 kb on + strandat 1314.340 kb on + strand, within SM_b20904at 1314.340 kb on + strand, within SM_b20904at 1314.386 kb on + strand, within SM_b20904at 1314.387 kb on - strand, within SM_b20904at 1315.286 kb on + strandat 1315.287 kb on - strandat 1315.287 kb on - strandat 1315.298 kb on + strandat 1315.311 kb on + strandat 1315.311 kb on + strandat 1315.312 kb on - strandat 1315.312 kb on - strandat 1315.312 kb on - strandat 1315.376 kb on + strandat 1315.388 kb on + strandat 1315.389 kb on - strandat 1315.389 kb on - strandat 1315.411 kb on + strandat 1315.411 kb on + strandat 1315.411 kb on + strandat 1315.411 kb on + strandat 1315.411 kb on + strandat 1315.411 kb on + strandat 1315.412 kb on - strandat 1315.412 kb on - strandat 1315.412 kb on - strandat 1315.412 kb on - strandat 1315.487 kb on + strand, within SM_b20905at 1315.487 kb on + strand, within SM_b20905at 1315.583 kb on + strand, within SM_b20905at 1315.583 kb on + strand, within SM_b20905at 1315.583 kb on + strand, within SM_b20905at 1315.584 kb on - strand, within SM_b20905at 1315.605 kb on + strand, within SM_b20905at 1315.605 kb on + strand, within SM_b20905at 1315.771 kb on - strand, within SM_b20905at 1315.926 kb on - strand, within SM_b20905at 1315.926 kb on - strand, within SM_b20905at 1315.967 kb on + strand, within SM_b20905

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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1,313,227 - SM_b20903 0.28 -2.3
1,313,227 - SM_b20903 0.28 -3.7
1,313,227 - SM_b20903 0.28 -1.5
1,313,570 - SM_b20903 0.54 -2.9
1,313,589 + SM_b20903 0.55 -2.4
1,313,589 + SM_b20903 0.55 -3.0
1,313,649 + SM_b20903 0.59 -0.6
1,313,650 - SM_b20903 0.60 -2.6
1,313,653 - SM_b20903 0.60 -0.8
1,313,653 - SM_b20903 0.60 -2.3
1,313,679 + SM_b20903 0.62 -4.6
1,313,680 - SM_b20903 0.62 -3.8
1,313,814 + SM_b20903 0.72 -3.7
1,313,988 + SM_b20903 0.84 -2.6
1,313,988 + SM_b20903 0.84 -1.2
1,313,988 + SM_b20903 0.84 -2.6
1,314,180 + -1.1
1,314,340 + SM_b20904 0.16 -3.2
1,314,340 + SM_b20904 0.16 -2.7
1,314,386 + SM_b20904 0.22 -0.1
1,314,387 - SM_b20904 0.22 +1.2
1,315,286 + +0.2
1,315,287 - -0.7
1,315,287 - -0.7
1,315,298 + -0.3
1,315,311 + +0.3
1,315,311 + -0.6
1,315,312 - -0.7
1,315,312 - -0.4
1,315,312 - +1.3
1,315,376 + +0.3
1,315,388 + -0.4
1,315,389 - +0.2
1,315,389 - +0.7
1,315,411 + -0.4
1,315,411 + +0.0
1,315,411 + +1.0
1,315,411 + -0.5
1,315,411 + +0.5
1,315,411 + -0.0
1,315,412 - +0.3
1,315,412 - +0.0
1,315,412 - +0.3
1,315,412 - -0.9
1,315,487 + SM_b20905 0.16 -0.4
1,315,487 + SM_b20905 0.16 -1.8
1,315,583 + SM_b20905 0.24 -0.4
1,315,583 + SM_b20905 0.24 +0.2
1,315,583 + SM_b20905 0.24 +0.3
1,315,584 - SM_b20905 0.24 -1.4
1,315,605 + SM_b20905 0.26 -0.0
1,315,605 + SM_b20905 0.26 -0.1
1,315,771 - SM_b20905 0.40 +0.9
1,315,926 - SM_b20905 0.54 -1.9
1,315,926 - SM_b20905 0.54 +0.1
1,315,967 + SM_b20905 0.57 +0.2

Or see this region's nucleotide sequence