Experiment: D-Glucose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20903 and SM_b20904 are separated by 14 nucleotides SM_b20904 and SM_b21712 are separated by 181 nucleotides SM_b21712 and SM_b20905 are separated by 38 nucleotides
SM_b20903: SM_b20903 - sugar uptake ABC transporter permease, at 1,312,839 to 1,314,200
_b20903
SM_b20904: SM_b20904 - sugar uptake ABC transporter ATP-binding protein, at 1,314,215 to 1,315,000
_b20904
SM_b21712: SM_b21712 - tRNA-Arg, at 1,315,182 to 1,315,258
_b21712
SM_b20905: SM_b20905 - transposase, at 1,315,297 to 1,316,469
_b20905
Position (kb)
1314
1315
1316 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 1313.227 kb on - strand, within SM_b20903 at 1313.227 kb on - strand, within SM_b20903 at 1313.227 kb on - strand, within SM_b20903 at 1313.570 kb on - strand, within SM_b20903 at 1313.589 kb on + strand, within SM_b20903 at 1313.589 kb on + strand, within SM_b20903 at 1313.649 kb on + strand, within SM_b20903 at 1313.650 kb on - strand, within SM_b20903 at 1313.653 kb on - strand, within SM_b20903 at 1313.653 kb on - strand, within SM_b20903 at 1313.679 kb on + strand, within SM_b20903 at 1313.680 kb on - strand, within SM_b20903 at 1313.814 kb on + strand, within SM_b20903 at 1313.988 kb on + strand, within SM_b20903 at 1313.988 kb on + strand, within SM_b20903 at 1313.988 kb on + strand, within SM_b20903 at 1314.180 kb on + strand at 1314.340 kb on + strand, within SM_b20904 at 1314.340 kb on + strand, within SM_b20904 at 1314.386 kb on + strand, within SM_b20904 at 1314.387 kb on - strand, within SM_b20904 at 1315.286 kb on + strand at 1315.287 kb on - strand at 1315.287 kb on - strand at 1315.298 kb on + strand at 1315.311 kb on + strand at 1315.311 kb on + strand at 1315.312 kb on - strand at 1315.312 kb on - strand at 1315.312 kb on - strand at 1315.376 kb on + strand at 1315.388 kb on + strand at 1315.389 kb on - strand at 1315.389 kb on - strand at 1315.411 kb on + strand at 1315.411 kb on + strand at 1315.411 kb on + strand at 1315.411 kb on + strand at 1315.411 kb on + strand at 1315.411 kb on + strand at 1315.412 kb on - strand at 1315.412 kb on - strand at 1315.412 kb on - strand at 1315.412 kb on - strand at 1315.487 kb on + strand, within SM_b20905 at 1315.487 kb on + strand, within SM_b20905 at 1315.583 kb on + strand, within SM_b20905 at 1315.583 kb on + strand, within SM_b20905 at 1315.583 kb on + strand, within SM_b20905 at 1315.584 kb on - strand, within SM_b20905 at 1315.605 kb on + strand, within SM_b20905 at 1315.605 kb on + strand, within SM_b20905 at 1315.771 kb on - strand, within SM_b20905 at 1315.926 kb on - strand, within SM_b20905 at 1315.926 kb on - strand, within SM_b20905 at 1315.967 kb on + strand, within SM_b20905
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose (C) remove 1,313,227 - SM_b20903 0.28 -2.3 1,313,227 - SM_b20903 0.28 -3.7 1,313,227 - SM_b20903 0.28 -1.5 1,313,570 - SM_b20903 0.54 -2.9 1,313,589 + SM_b20903 0.55 -2.4 1,313,589 + SM_b20903 0.55 -3.0 1,313,649 + SM_b20903 0.59 -0.6 1,313,650 - SM_b20903 0.60 -2.6 1,313,653 - SM_b20903 0.60 -0.8 1,313,653 - SM_b20903 0.60 -2.3 1,313,679 + SM_b20903 0.62 -4.6 1,313,680 - SM_b20903 0.62 -3.8 1,313,814 + SM_b20903 0.72 -3.7 1,313,988 + SM_b20903 0.84 -2.6 1,313,988 + SM_b20903 0.84 -1.2 1,313,988 + SM_b20903 0.84 -2.6 1,314,180 + -1.1 1,314,340 + SM_b20904 0.16 -3.2 1,314,340 + SM_b20904 0.16 -2.7 1,314,386 + SM_b20904 0.22 -0.1 1,314,387 - SM_b20904 0.22 +1.2 1,315,286 + +0.2 1,315,287 - -0.7 1,315,287 - -0.7 1,315,298 + -0.3 1,315,311 + +0.3 1,315,311 + -0.6 1,315,312 - -0.7 1,315,312 - -0.4 1,315,312 - +1.3 1,315,376 + +0.3 1,315,388 + -0.4 1,315,389 - +0.2 1,315,389 - +0.7 1,315,411 + -0.4 1,315,411 + +0.0 1,315,411 + +1.0 1,315,411 + -0.5 1,315,411 + +0.5 1,315,411 + -0.0 1,315,412 - +0.3 1,315,412 - +0.0 1,315,412 - +0.3 1,315,412 - -0.9 1,315,487 + SM_b20905 0.16 -0.4 1,315,487 + SM_b20905 0.16 -1.8 1,315,583 + SM_b20905 0.24 -0.4 1,315,583 + SM_b20905 0.24 +0.2 1,315,583 + SM_b20905 0.24 +0.3 1,315,584 - SM_b20905 0.24 -1.4 1,315,605 + SM_b20905 0.26 -0.0 1,315,605 + SM_b20905 0.26 -0.1 1,315,771 - SM_b20905 0.40 +0.9 1,315,926 - SM_b20905 0.54 -1.9 1,315,926 - SM_b20905 0.54 +0.1 1,315,967 + SM_b20905 0.57 +0.2
Or see this region's nucleotide sequence