Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS08695

Experiment: Glucose (C) and nitrate (N); with MOPS

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Glucose (C) and nitrate (N); with MOPS
1,931,199	+		PFLU_RS08685	0.77	+0.2
1,931,199	+		PFLU_RS08685	0.77	-0.8
1,931,199	+		PFLU_RS08685	0.77	+1.2
1,931,199	+		PFLU_RS08685	0.77	+1.1
1,931,199	+		PFLU_RS08685	0.77	+0.4
1,931,199	+		PFLU_RS08685	0.77	+0.0
1,931,199	+		PFLU_RS08685	0.77	-0.4
1,931,199	+		PFLU_RS08685	0.77	-1.1
1,931,199	+		PFLU_RS08685	0.77	-0.2
1,931,199	+		PFLU_RS08685	0.77	-0.8
1,931,199	+		PFLU_RS08685	0.77	+0.1
1,931,199	+		PFLU_RS08685	0.77	+1.9
1,931,199	+		PFLU_RS08685	0.77	-0.0
1,931,199	+		PFLU_RS08685	0.77	-1.5
1,931,199	+		PFLU_RS08685	0.77	-0.4
1,931,200	-		PFLU_RS08685	0.77	-0.5
1,931,200	-		PFLU_RS08685	0.77	-1.7
1,931,200	-		PFLU_RS08685	0.77	+0.5
1,931,200	-		PFLU_RS08685	0.77	+1.3
1,931,200	-		PFLU_RS08685	0.77	-0.1
1,931,200	-		PFLU_RS08685	0.77	+0.9
1,931,200	-		PFLU_RS08685	0.77	+1.0
1,931,200	-		PFLU_RS08685	0.77	+0.4
1,931,200	-		PFLU_RS08685	0.77	+1.4
1,931,200	-		PFLU_RS08685	0.77	-1.2
1,931,200	-		PFLU_RS08685	0.77	+1.2
1,931,200	-		PFLU_RS08685	0.77	+0.6
1,931,200	-		PFLU_RS08685	0.77	+0.2
1,931,200	-		PFLU_RS08685	0.77	-1.0
1,931,200	-		PFLU_RS08685	0.77	-0.3
1,931,200	-		PFLU_RS08685	0.77	-0.4
1,931,203	+		PFLU_RS08685	0.77	-0.6
1,931,203	+		PFLU_RS08685	0.77	-2.2
1,931,203	+		PFLU_RS08685	0.77	-1.2
1,931,204	-		PFLU_RS08685	0.78	-0.7
1,931,204	-		PFLU_RS08685	0.78	-0.4
1,931,204	-		PFLU_RS08685	0.78	-1.1
1,931,468	+				+1.4
1,931,468	+				-0.8
1,931,468	+				+1.9
1,931,468	+				-0.9
1,931,468	+				+4.4
1,931,468	+				-0.9
1,931,469	-				-0.4
1,931,469	-				+1.0
1,931,469	-				+0.2
1,931,469	-				+2.8
1,931,469	-				+0.6
1,931,485	+				-1.0
1,931,486	-				-0.1
1,931,486	-				-0.0
1,931,486	-				-0.2
1,931,726	+		PFLU_RS08690	0.61	+0.6
1,931,726	+		PFLU_RS08690	0.61	+0.0
1,931,726	+		PFLU_RS08690	0.61	-2.0
1,931,726	+		PFLU_RS08690	0.61	-0.0
1,931,726	+		PFLU_RS08690	0.61	-0.6
1,931,726	+		PFLU_RS08690	0.61	-0.5
1,931,726	+		PFLU_RS08690	0.61	-0.2
1,931,726	+		PFLU_RS08690	0.61	-1.4
1,931,726	+		PFLU_RS08690	0.61	+0.1
1,931,726	+		PFLU_RS08690	0.61	-1.1
1,931,726	+		PFLU_RS08690	0.61	-1.5
1,931,726	+		PFLU_RS08690	0.61	-0.4
1,931,726	+		PFLU_RS08690	0.61	-0.5
1,931,727	-		PFLU_RS08690	0.61	-0.2
1,931,727	-		PFLU_RS08690	0.61	-1.1
1,931,727	-		PFLU_RS08690	0.61	+3.5
1,931,727	-		PFLU_RS08690	0.61	-1.0
1,931,727	-		PFLU_RS08690	0.61	+0.1
1,931,727	-		PFLU_RS08690	0.61	-0.2
1,931,727	-		PFLU_RS08690	0.61	+1.0
1,931,727	-		PFLU_RS08690	0.61	+1.0
1,931,727	-		PFLU_RS08690	0.61	+1.1
1,931,756	+		PFLU_RS08690	0.68	-0.8
1,931,757	-		PFLU_RS08690	0.68	+0.9
1,931,771	+		PFLU_RS08690	0.72	-1.0
1,931,771	+		PFLU_RS08690	0.72	+0.0
1,931,771	+		PFLU_RS08690	0.72	-1.0
1,931,771	+		PFLU_RS08690	0.72	+0.5
1,931,771	+		PFLU_RS08690	0.72	+0.2
1,931,771	+		PFLU_RS08690	0.72	+0.5
1,931,771	+		PFLU_RS08690	0.72	+0.6
1,931,771	+		PFLU_RS08690	0.72	+0.8
1,931,772	-		PFLU_RS08690	0.72	+0.5
1,931,772	-		PFLU_RS08690	0.72	-1.4
1,931,772	-		PFLU_RS08690	0.72	-1.9
1,931,772	-		PFLU_RS08690	0.72	+0.1
1,931,772	-		PFLU_RS08690	0.72	+0.9
1,931,772	-		PFLU_RS08690	0.72	-1.2
1,931,772	-		PFLU_RS08690	0.72	+0.3
1,931,772	-		PFLU_RS08690	0.72	+0.7
1,931,772	-		PFLU_RS08690	0.72	-0.6
1,931,772	-		PFLU_RS08690	0.72	-0.5
1,931,772	-		PFLU_RS08690	0.72	-1.4
1,931,772	-		PFLU_RS08690	0.72	-0.6
1,931,772	-		PFLU_RS08690	0.72	-2.2
1,931,772	-		PFLU_RS08690	0.72	+1.5
1,931,774	+		PFLU_RS08690	0.73	-0.6
1,931,774	+		PFLU_RS08690	0.73	-0.2
1,931,774	+		PFLU_RS08690	0.73	-0.7
1,931,775	-		PFLU_RS08690	0.73	+1.6
1,931,859	+				+0.4
1,931,870	+				-0.6
1,931,870	+				+0.5
1,932,008	+				+0.5
1,932,009	-				-0.0
1,932,194	+		PFLU_RS08695	0.44	-1.5
1,932,194	+		PFLU_RS08695	0.44	-1.4
1,932,194	+		PFLU_RS08695	0.44	-1.2
1,932,194	+		PFLU_RS08695	0.44	+0.8
1,932,194	+		PFLU_RS08695	0.44	-0.6
1,932,194	+		PFLU_RS08695	0.44	-0.2
1,932,194	+		PFLU_RS08695	0.44	-0.5
1,932,194	+		PFLU_RS08695	0.44	+1.4
1,932,195	-		PFLU_RS08695	0.44	+1.3
1,932,195	-		PFLU_RS08695	0.44	-0.5
1,932,195	-		PFLU_RS08695	0.44	+0.9
1,932,195	-		PFLU_RS08695	0.44	+0.5
1,932,195	-		PFLU_RS08695	0.44	+0.2
1,932,353	+				+0.9
1,932,353	+				+0.2
1,932,353	+				-0.1
1,932,353	+				+0.2
1,932,353	+				-2.2
1,932,353	+				-1.8
1,932,353	+				+1.3
1,932,354	-				-2.1
1,932,354	-				-0.5
1,932,354	-				-1.2
1,932,413	+				+0.2
1,932,413	+				+0.0
1,932,456	-				-0.5
1,932,456	-				-0.9
1,932,456	-				-0.8
1,932,456	-				-1.5
1,932,495	+				+0.3
1,932,495	+				-0.6
1,932,495	+				+0.2
1,932,496	-				+1.6
1,932,496	-				+1.7
1,932,496	-				-0.7
1,932,527	+				-0.1
1,932,527	+				-0.3
1,932,578	-		PFLU_RS31480	0.21	-0.7
1,932,589	-		PFLU_RS31480	0.26	+0.2
1,932,589	-		PFLU_RS31480	0.26	-0.2
1,932,589	-		PFLU_RS31480	0.26	-0.9
1,932,590	+		PFLU_RS31480	0.26	+0.6
1,932,590	+		PFLU_RS31480	0.26	+0.8
1,932,590	+		PFLU_RS31480	0.26	-1.2
1,932,590	+		PFLU_RS31480	0.26	-0.6
1,932,590	+		PFLU_RS31480	0.26	-0.0
1,932,590	+		PFLU_RS31480	0.26	-0.6
1,932,590	+		PFLU_RS31480	0.26	-1.0
1,932,590	+		PFLU_RS31480	0.26	-1.4
1,932,590	+		PFLU_RS31480	0.26	-2.2
1,932,590	+		PFLU_RS31480	0.26	-0.5
1,932,590	+		PFLU_RS31480	0.26	-0.1
1,932,590	+		PFLU_RS31480	0.26	-0.2
1,932,590	+		PFLU_RS31480	0.26	-1.1
1,932,590	+		PFLU_RS31480	0.26	+0.3
1,932,590	+		PFLU_RS31480	0.26	+0.3
1,932,590	+		PFLU_RS31480	0.26	+0.4
1,932,591	-		PFLU_RS31480	0.26	+0.9
1,932,591	-		PFLU_RS31480	0.26	+0.4
1,932,591	-		PFLU_RS31480	0.26	+1.0
1,932,591	-		PFLU_RS31480	0.26	-2.2
1,932,591	-		PFLU_RS31480	0.26	+0.8
1,932,591	-		PFLU_RS31480	0.26	-0.8
1,932,591	-		PFLU_RS31480	0.26	+0.7
1,932,591	-		PFLU_RS31480	0.26	+0.5
1,932,591	-		PFLU_RS31480	0.26	-0.2
1,932,616	-		PFLU_RS31480	0.37	+0.1
1,932,629	+		PFLU_RS31480	0.42	-0.4
1,932,629	+		PFLU_RS31480	0.42	+0.2
1,932,629	+		PFLU_RS31480	0.42	+0.0
1,932,629	+		PFLU_RS31480	0.42	+0.8
1,932,629	+		PFLU_RS31480	0.42	-0.1
1,932,629	+		PFLU_RS31480	0.42	-1.1
1,932,629	+		PFLU_RS31480	0.42	+0.7
1,932,629	+		PFLU_RS31480	0.42	-0.5
1,932,629	+		PFLU_RS31480	0.42	-1.1
1,932,629	+		PFLU_RS31480	0.42	-0.5
1,932,629	+		PFLU_RS31480	0.42	+1.9
1,932,629	+		PFLU_RS31480	0.42	+1.6
1,932,629	+		PFLU_RS31480	0.42	-0.2
1,932,629	+		PFLU_RS31480	0.42	-0.7
1,932,629	+		PFLU_RS31480	0.42	-0.1
1,932,629	+		PFLU_RS31480	0.42	-0.8
1,932,629	+		PFLU_RS31480	0.42	+1.8
1,932,629	+		PFLU_RS31480	0.42	+0.0
1,932,629	+		PFLU_RS31480	0.42	-0.6
1,932,629	+		PFLU_RS31480	0.42	-1.2
1,932,630	-		PFLU_RS31480	0.42	+0.5
1,932,630	-		PFLU_RS31480	0.42	+1.0
1,932,630	-		PFLU_RS31480	0.42	-1.0
1,932,630	-		PFLU_RS31480	0.42	-1.2
1,932,630	-		PFLU_RS31480	0.42	+0.2
1,932,630	-		PFLU_RS31480	0.42	+0.9
1,932,630	-		PFLU_RS31480	0.42	-0.2
1,932,630	-		PFLU_RS31480	0.42	-0.6
1,932,630	-		PFLU_RS31480	0.42	-0.6
1,932,630	-		PFLU_RS31480	0.42	+2.1
1,932,630	-		PFLU_RS31480	0.42	-0.6
1,932,630	-		PFLU_RS31480	0.42	+2.2
1,932,653	-		PFLU_RS31480	0.52	+0.2
1,932,653	-		PFLU_RS31480	0.52	-0.8
1,932,729	+		PFLU_RS31480	0.83	+0.2
1,932,730	-		PFLU_RS31480	0.83	-0.6
1,932,730	-		PFLU_RS31480	0.83	-0.7
1,932,730	-		PFLU_RS31480	0.83	-0.1
1,932,731	+		PFLU_RS31480	0.83	-0.1
1,932,731	+		PFLU_RS31480	0.83	-0.0
1,932,731	+		PFLU_RS31480	0.83	-1.5
1,932,731	+		PFLU_RS31480	0.83	+0.2
1,932,731	+		PFLU_RS31480	0.83	+0.6
1,932,731	+		PFLU_RS31480	0.83	-1.2
1,932,731	+		PFLU_RS31480	0.83	-1.4
1,932,731	+		PFLU_RS31480	0.83	+1.1
1,932,731	+		PFLU_RS31480	0.83	+0.6
1,932,732	-		PFLU_RS31480	0.84	+1.1
1,932,732	-		PFLU_RS31480	0.84	-1.5
1,932,732	-		PFLU_RS31480	0.84	-0.8
1,932,732	-		PFLU_RS31480	0.84	+1.0
1,932,732	-		PFLU_RS31480	0.84	+0.4
1,932,732	-		PFLU_RS31480	0.84	+0.6
1,932,732	-		PFLU_RS31480	0.84	-0.0
1,932,732	-		PFLU_RS31480	0.84	+0.9
1,932,738	+		PFLU_RS31480	0.86	+0.8
1,932,753	+				+2.0
1,932,754	-				+0.5
1,932,754	-				-0.3
1,932,754	-				+1.2
1,932,798	-				-0.4
1,932,798	-				+0.1
1,932,798	-				-0.1
1,932,798	-				+0.3
1,932,798	-				-0.5
1,932,835	+				-0.9
1,932,835	+				-1.8
1,932,836	-				+1.2
1,932,836	-				-2.0
1,933,021	+				+1.5
1,933,021	+				-1.2
1,933,021	+				+1.2
1,933,138	+		PFLU_RS08700	0.16	+0.3
1,933,157	+		PFLU_RS08700	0.17	-0.8
1,933,157	+		PFLU_RS08700	0.17	+0.6
1,933,157	+		PFLU_RS08700	0.17	+1.9
1,933,158	-		PFLU_RS08700	0.17	+1.4
1,933,160	+		PFLU_RS08700	0.17	+1.8
1,933,160	+		PFLU_RS08700	0.17	+0.6
1,933,160	+		PFLU_RS08700	0.17	-0.2
1,933,160	+		PFLU_RS08700	0.17	-0.1
1,933,161	-		PFLU_RS08700	0.17	+2.2
1,933,161	-		PFLU_RS08700	0.17	+0.2
1,933,161	-		PFLU_RS08700	0.17	-0.1
1,933,161	-		PFLU_RS08700	0.17	-1.1
1,933,161	-		PFLU_RS08700	0.17	-0.4
1,933,161	-		PFLU_RS08700	0.17	+0.9
1,933,161	-		PFLU_RS08700	0.17	-1.1
1,933,198	+		PFLU_RS08700	0.20	+2.8
1,933,198	+		PFLU_RS08700	0.20	+0.2
1,933,198	+		PFLU_RS08700	0.20	-0.1
1,933,198	+		PFLU_RS08700	0.20	+2.2
1,933,198	+		PFLU_RS08700	0.20	+1.2
1,933,199	-		PFLU_RS08700	0.20	-0.4
1,933,199	-		PFLU_RS08700	0.20	+0.4
1,933,201	+		PFLU_RS08700	0.20	+0.9
1,933,201	+		PFLU_RS08700	0.20	-1.0
1,933,202	-		PFLU_RS08700	0.20	+1.2
1,933,202	-		PFLU_RS08700	0.20	+0.1
1,933,202	-		PFLU_RS08700	0.20	-0.6
1,933,202	-		PFLU_RS08700	0.20	-0.6
1,933,202	-		PFLU_RS08700	0.20	+0.3
1,933,202	-		PFLU_RS08700	0.20	-1.0
1,933,214	+		PFLU_RS08700	0.21	-0.1
1,933,214	+		PFLU_RS08700	0.21	+0.5
1,933,214	+		PFLU_RS08700	0.21	+1.2
1,933,214	+		PFLU_RS08700	0.21	+0.9
1,933,214	+		PFLU_RS08700	0.21	+1.2
1,933,214	+		PFLU_RS08700	0.21	-0.5
1,933,214	+		PFLU_RS08700	0.21	+0.2
1,933,215	-		PFLU_RS08700	0.21	+0.3
1,933,215	-		PFLU_RS08700	0.21	-0.5
1,933,215	-		PFLU_RS08700	0.21	-0.1
1,933,276	+		PFLU_RS08700	0.25	-0.8
1,933,276	+		PFLU_RS08700	0.25	+0.2
1,933,276	+		PFLU_RS08700	0.25	-0.4
1,933,276	+		PFLU_RS08700	0.25	+0.2
1,933,276	+		PFLU_RS08700	0.25	+0.2
1,933,276	+		PFLU_RS08700	0.25	-0.4
1,933,276	+		PFLU_RS08700	0.25	+0.6
1,933,276	+		PFLU_RS08700	0.25	+0.9
1,933,277	-		PFLU_RS08700	0.25	+1.7
1,933,277	-		PFLU_RS08700	0.25	+1.4
1,933,277	-		PFLU_RS08700	0.25	+2.2
1,933,277	-		PFLU_RS08700	0.25	+2.2
1,933,277	-		PFLU_RS08700	0.25	+0.4
1,933,277	-		PFLU_RS08700	0.25	+1.8
1,933,277	-		PFLU_RS08700	0.25	-1.0
1,933,277	-		PFLU_RS08700	0.25	+1.6
1,933,284	+		PFLU_RS08700	0.26	+0.8
1,933,285	-		PFLU_RS08700	0.26	-0.1
1,933,285	-		PFLU_RS08700	0.26	+0.0
1,933,285	-		PFLU_RS08700	0.26	+1.1
1,933,339	+		PFLU_RS08700	0.30	-1.5
1,933,340	-		PFLU_RS08700	0.30	-0.1