Experiment: RCH2_defined_noCarbon with Mixed culture; Sinorhizobium meliloti 1021 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS17975 and BWI76_RS17980 are separated by 19 nucleotides BWI76_RS17980 and BWI76_RS17985 are separated by 97 nucleotides BWI76_RS17985 and BWI76_RS17990 are separated by 132 nucleotides
BWI76_RS17975: BWI76_RS17975 - tail-specific protease, at 3,734,041 to 3,736,089
_RS17975
BWI76_RS17980: BWI76_RS17980 - RNA chaperone ProQ, at 3,736,109 to 3,736,792
_RS17980
BWI76_RS17985: BWI76_RS17985 - hypothetical protein, at 3,736,890 to 3,737,387
_RS17985
BWI76_RS17990: BWI76_RS17990 - paraquat-inducible membrane protein A, at 3,737,520 to 3,738,803
_RS17990
Position (kb)
3736
3737
3738 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 3735.988 kb on - strand at 3736.159 kb on + strand at 3736.446 kb on + strand, within BWI76_RS17980 at 3736.446 kb on + strand, within BWI76_RS17980 at 3736.454 kb on - strand, within BWI76_RS17980 at 3736.575 kb on - strand, within BWI76_RS17980 at 3736.575 kb on - strand, within BWI76_RS17980 at 3736.582 kb on + strand, within BWI76_RS17980 at 3736.871 kb on + strand at 3736.871 kb on + strand at 3737.128 kb on - strand, within BWI76_RS17985 at 3737.202 kb on + strand, within BWI76_RS17985 at 3737.251 kb on - strand, within BWI76_RS17985 at 3737.363 kb on - strand at 3737.365 kb on + strand at 3737.413 kb on + strand at 3737.421 kb on - strand at 3737.421 kb on - strand at 3737.421 kb on - strand at 3737.421 kb on - strand at 3737.421 kb on - strand at 3737.492 kb on + strand at 3737.539 kb on + strand at 3737.547 kb on - strand at 3737.596 kb on + strand at 3737.834 kb on - strand, within BWI76_RS17990 at 3737.858 kb on - strand, within BWI76_RS17990 at 3737.986 kb on - strand, within BWI76_RS17990 at 3738.077 kb on + strand, within BWI76_RS17990 at 3738.167 kb on + strand, within BWI76_RS17990
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Mixed culture; Sinorhizobium meliloti 1021 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x remove 3,735,988 - -2.7 3,736,159 + +0.5 3,736,446 + BWI76_RS17980 0.49 -4.0 3,736,446 + BWI76_RS17980 0.49 -3.3 3,736,454 - BWI76_RS17980 0.50 +0.5 3,736,575 - BWI76_RS17980 0.68 -1.7 3,736,575 - BWI76_RS17980 0.68 -2.6 3,736,582 + BWI76_RS17980 0.69 +1.5 3,736,871 + -1.1 3,736,871 + -0.4 3,737,128 - BWI76_RS17985 0.48 +0.0 3,737,202 + BWI76_RS17985 0.63 -0.7 3,737,251 - BWI76_RS17985 0.72 +1.2 3,737,363 - -0.4 3,737,365 + +0.9 3,737,413 + -2.1 3,737,421 - -0.3 3,737,421 - -1.5 3,737,421 - +3.0 3,737,421 - +0.4 3,737,421 - -0.2 3,737,492 + -1.7 3,737,539 + +0.6 3,737,547 - +0.4 3,737,596 + +0.3 3,737,834 - BWI76_RS17990 0.24 +0.2 3,737,858 - BWI76_RS17990 0.26 +0.2 3,737,986 - BWI76_RS17990 0.36 -1.9 3,738,077 + BWI76_RS17990 0.43 +0.2 3,738,167 + BWI76_RS17990 0.50 -0.1
Or see this region's nucleotide sequence