Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS17965

Experiment: RCH2_defined_noCarbon with Mixed culture; Sinorhizobium meliloti 1021 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS17960 and BWI76_RS17965 are separated by 177 nucleotidesBWI76_RS17965 and BWI76_RS17970 are separated by 74 nucleotides BWI76_RS17960: BWI76_RS17960 - DNA-binding transcriptional regulator KdgR, at 3,730,506 to 3,731,297 _RS17960 BWI76_RS17965: BWI76_RS17965 - MFS transporter, at 3,731,475 to 3,732,848 _RS17965 BWI76_RS17970: BWI76_RS17970 - zinc metalloprotease HtpX, at 3,732,923 to 3,733,804 _RS17970 Position (kb) 3731 3732 3733Strain fitness (log2 ratio) -1 0 1at 3730.667 kb on + strand, within BWI76_RS17960at 3730.752 kb on - strand, within BWI76_RS17960at 3730.948 kb on - strandat 3731.023 kb on - strand, within BWI76_RS17960at 3731.559 kb on + strandat 3731.832 kb on + strand, within BWI76_RS17965at 3732.158 kb on - strand, within BWI76_RS17965at 3732.243 kb on + strand, within BWI76_RS17965at 3732.774 kb on - strandat 3733.038 kb on - strand, within BWI76_RS17970at 3733.496 kb on + strand, within BWI76_RS17970

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Per-strain Table

Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Mixed culture; Sinorhizobium meliloti 1021 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x
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3,730,667 + BWI76_RS17960 0.20 -0.1
3,730,752 - BWI76_RS17960 0.31 +1.5
3,730,948 - +1.5
3,731,023 - BWI76_RS17960 0.65 +1.5
3,731,559 + +0.3
3,731,832 + BWI76_RS17965 0.26 +0.1
3,732,158 - BWI76_RS17965 0.50 -0.2
3,732,243 + BWI76_RS17965 0.56 -1.0
3,732,774 - -1.6
3,733,038 - BWI76_RS17970 0.13 +0.2
3,733,496 + BWI76_RS17970 0.65 +1.5

Or see this region's nucleotide sequence