Experiment: RCH2_defined_noCarbon with Mixed culture; Sinorhizobium meliloti 1021 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS15170 and BWI76_RS15175 are separated by 244 nucleotides BWI76_RS15175 and BWI76_RS15180 are separated by 305 nucleotides BWI76_RS15180 and BWI76_RS15185 are separated by 111 nucleotides BWI76_RS15185 and BWI76_RS15190 are separated by 90 nucleotides
BWI76_RS15170: BWI76_RS15170 - trans-aconitate 2-methyltransferase, at 3,180,191 to 3,180,943
_RS15170
BWI76_RS15175: BWI76_RS15175 - N-acetyltransferase, at 3,181,188 to 3,181,628
_RS15175
BWI76_RS15180: BWI76_RS15180 - altronate oxidoreductase, at 3,181,934 to 3,183,385
_RS15180
BWI76_RS15185: BWI76_RS15185 - N-acetyltransferase, at 3,183,497 to 3,184,027
_RS15185
BWI76_RS15190: BWI76_RS15190 - GGDEF domain-containing protein, at 3,184,118 to 3,185,530
_RS15190
Position (kb)
3181
3182
3183
3184 Strain fitness (log2 ratio)
-1
0
1 at 3181.022 kb on + strand at 3181.071 kb on - strand at 3181.278 kb on + strand, within BWI76_RS15175 at 3181.295 kb on - strand, within BWI76_RS15175 at 3181.487 kb on - strand, within BWI76_RS15175 at 3181.513 kb on - strand, within BWI76_RS15175 at 3181.582 kb on - strand, within BWI76_RS15175 at 3181.625 kb on + strand at 3181.764 kb on - strand at 3181.771 kb on - strand at 3182.136 kb on - strand, within BWI76_RS15180 at 3182.157 kb on + strand, within BWI76_RS15180 at 3182.285 kb on + strand, within BWI76_RS15180 at 3182.293 kb on - strand, within BWI76_RS15180 at 3182.480 kb on + strand, within BWI76_RS15180 at 3182.816 kb on + strand, within BWI76_RS15180 at 3182.816 kb on + strand, within BWI76_RS15180 at 3183.141 kb on + strand at 3183.141 kb on + strand, within BWI76_RS15180 at 3183.345 kb on - strand at 3183.648 kb on + strand, within BWI76_RS15185 at 3183.910 kb on + strand, within BWI76_RS15185
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Mixed culture; Sinorhizobium meliloti 1021 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x remove 3,181,022 + +0.1 3,181,071 - +0.6 3,181,278 + BWI76_RS15175 0.20 -0.6 3,181,295 - BWI76_RS15175 0.24 +0.7 3,181,487 - BWI76_RS15175 0.68 +0.5 3,181,513 - BWI76_RS15175 0.74 +0.4 3,181,582 - BWI76_RS15175 0.89 +0.1 3,181,625 + -0.3 3,181,764 - -0.3 3,181,771 - +0.3 3,182,136 - BWI76_RS15180 0.14 +0.4 3,182,157 + BWI76_RS15180 0.15 +0.7 3,182,285 + BWI76_RS15180 0.24 +0.2 3,182,293 - BWI76_RS15180 0.25 +1.4 3,182,480 + BWI76_RS15180 0.38 +0.4 3,182,816 + BWI76_RS15180 0.61 -0.5 3,182,816 + BWI76_RS15180 0.61 +1.5 3,183,141 + +1.7 3,183,141 + BWI76_RS15180 0.83 +0.8 3,183,345 - +1.0 3,183,648 + BWI76_RS15185 0.28 -0.3 3,183,910 + BWI76_RS15185 0.78 +0.2
Or see this region's nucleotide sequence