Experiment: RCH2_defined_noCarbon with Mixed culture; Sinorhizobium meliloti 1021 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS14920 and BWI76_RS14925 overlap by 4 nucleotides BWI76_RS14925 and BWI76_RS14930 are separated by 24 nucleotides
BWI76_RS14920: BWI76_RS14920 - ABC transporter permease, at 3,127,403 to 3,128,410
_RS14920
BWI76_RS14925: BWI76_RS14925 - ABC transporter substrate-binding protein, at 3,128,407 to 3,129,363
_RS14925
BWI76_RS14930: BWI76_RS14930 - hypothetical protein, at 3,129,388 to 3,130,197
_RS14930
Position (kb)
3128
3129
3130 Strain fitness (log2 ratio)
-1
0
1
2
3 at 3127.426 kb on + strand at 3127.541 kb on - strand, within BWI76_RS14920 at 3127.616 kb on + strand, within BWI76_RS14920 at 3127.710 kb on - strand, within BWI76_RS14920 at 3127.763 kb on + strand, within BWI76_RS14920 at 3127.771 kb on - strand, within BWI76_RS14920 at 3127.777 kb on - strand, within BWI76_RS14920 at 3127.856 kb on + strand, within BWI76_RS14920 at 3128.045 kb on + strand, within BWI76_RS14920 at 3128.169 kb on - strand, within BWI76_RS14920 at 3128.190 kb on + strand, within BWI76_RS14920 at 3128.233 kb on - strand, within BWI76_RS14920 at 3128.385 kb on - strand at 3128.672 kb on - strand, within BWI76_RS14925 at 3128.743 kb on + strand, within BWI76_RS14925 at 3128.910 kb on - strand, within BWI76_RS14925 at 3128.915 kb on - strand, within BWI76_RS14925 at 3129.255 kb on + strand, within BWI76_RS14925 at 3129.288 kb on - strand at 3129.397 kb on + strand at 3129.607 kb on + strand, within BWI76_RS14930
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Mixed culture; Sinorhizobium meliloti 1021 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x remove 3,127,426 + +1.7 3,127,541 - BWI76_RS14920 0.14 -0.2 3,127,616 + BWI76_RS14920 0.21 +3.7 3,127,710 - BWI76_RS14920 0.30 -1.5 3,127,763 + BWI76_RS14920 0.36 -0.8 3,127,771 - BWI76_RS14920 0.37 -0.7 3,127,777 - BWI76_RS14920 0.37 +0.4 3,127,856 + BWI76_RS14920 0.45 -0.6 3,128,045 + BWI76_RS14920 0.64 +0.6 3,128,169 - BWI76_RS14920 0.76 +0.0 3,128,190 + BWI76_RS14920 0.78 -0.3 3,128,233 - BWI76_RS14920 0.82 +0.0 3,128,385 - +0.1 3,128,672 - BWI76_RS14925 0.28 +0.7 3,128,743 + BWI76_RS14925 0.35 -0.2 3,128,910 - BWI76_RS14925 0.53 +0.8 3,128,915 - BWI76_RS14925 0.53 +0.6 3,129,255 + BWI76_RS14925 0.89 +0.4 3,129,288 - +0.3 3,129,397 + -0.1 3,129,607 + BWI76_RS14930 0.27 +0.3
Or see this region's nucleotide sequence