Experiment: RCH2_defined_noCarbon with Mixed culture; Sinorhizobium meliloti 1021 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS07375 and BWI76_RS07380 are separated by 37 nucleotides BWI76_RS07380 and BWI76_RS07385 are separated by 127 nucleotides
BWI76_RS07375: BWI76_RS07375 - dehydrogenase, at 1,556,124 to 1,557,275
_RS07375
BWI76_RS07380: BWI76_RS07380 - hypothetical protein, at 1,557,313 to 1,557,729
_RS07380
BWI76_RS07385: BWI76_RS07385 - short-chain dehydrogenase/reductase SDR, at 1,557,857 to 1,558,606
_RS07385
Position (kb)
1557
1558 Strain fitness (log2 ratio)
-2
-1
0
1 at 1556.322 kb on + strand, within BWI76_RS07375 at 1556.413 kb on + strand, within BWI76_RS07375 at 1556.477 kb on - strand, within BWI76_RS07375 at 1556.484 kb on - strand, within BWI76_RS07375 at 1556.641 kb on - strand, within BWI76_RS07375 at 1556.690 kb on + strand, within BWI76_RS07375 at 1557.105 kb on - strand, within BWI76_RS07375 at 1557.318 kb on - strand at 1557.318 kb on - strand at 1557.344 kb on + strand at 1557.362 kb on - strand, within BWI76_RS07380 at 1557.482 kb on - strand, within BWI76_RS07380 at 1557.767 kb on - strand at 1557.772 kb on + strand at 1557.811 kb on - strand at 1557.816 kb on + strand at 1557.824 kb on - strand at 1557.939 kb on + strand at 1558.175 kb on + strand, within BWI76_RS07385 at 1558.394 kb on - strand, within BWI76_RS07385
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Mixed culture; Sinorhizobium meliloti 1021 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x remove 1,556,322 + BWI76_RS07375 0.17 +0.2 1,556,413 + BWI76_RS07375 0.25 +0.0 1,556,477 - BWI76_RS07375 0.31 +0.0 1,556,484 - BWI76_RS07375 0.31 -2.0 1,556,641 - BWI76_RS07375 0.45 -1.0 1,556,690 + BWI76_RS07375 0.49 -0.1 1,557,105 - BWI76_RS07375 0.85 +0.3 1,557,318 - +0.6 1,557,318 - +0.4 1,557,344 + +0.4 1,557,362 - BWI76_RS07380 0.12 -0.4 1,557,482 - BWI76_RS07380 0.41 +0.7 1,557,767 - -0.5 1,557,772 + -0.5 1,557,811 - -1.0 1,557,816 + +1.3 1,557,824 - +1.4 1,557,939 + +1.4 1,558,175 + BWI76_RS07385 0.42 +0.4 1,558,394 - BWI76_RS07385 0.72 -0.0
Or see this region's nucleotide sequence