Experiment: RCH2_defined_noCarbon with Mixed culture; Sinorhizobium meliloti 1021 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS05620 and BWI76_RS05625 are separated by 252 nucleotides BWI76_RS05625 and BWI76_RS05630 are separated by 40 nucleotides
BWI76_RS05620: BWI76_RS05620 - NAD-dependent succinate-semialdehyde dehydrogenase, at 1,178,560 to 1,180,008
_RS05620
BWI76_RS05625: BWI76_RS05625 - Zn-finger protein, at 1,180,261 to 1,180,512
_RS05625
BWI76_RS05630: BWI76_RS05630 - TonB-dependent siderophore receptor, at 1,180,553 to 1,182,643
_RS05630
Position (kb)
1180
1181 Strain fitness (log2 ratio)
-1
0
1
2
3 at 1179.403 kb on + strand, within BWI76_RS05620 at 1179.467 kb on + strand, within BWI76_RS05620 at 1179.783 kb on + strand, within BWI76_RS05620 at 1179.859 kb on + strand, within BWI76_RS05620 at 1180.028 kb on - strand at 1180.062 kb on + strand at 1180.371 kb on + strand, within BWI76_RS05625 at 1180.659 kb on - strand at 1180.702 kb on + strand at 1180.710 kb on - strand at 1180.729 kb on + strand at 1180.851 kb on + strand, within BWI76_RS05630 at 1180.941 kb on - strand, within BWI76_RS05630 at 1181.060 kb on + strand, within BWI76_RS05630 at 1181.085 kb on + strand, within BWI76_RS05630 at 1181.338 kb on - strand, within BWI76_RS05630
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Mixed culture; Sinorhizobium meliloti 1021 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x remove 1,179,403 + BWI76_RS05620 0.58 -1.7 1,179,467 + BWI76_RS05620 0.63 -1.4 1,179,783 + BWI76_RS05620 0.84 -1.0 1,179,859 + BWI76_RS05620 0.90 +3.1 1,180,028 - -0.8 1,180,062 + -0.4 1,180,371 + BWI76_RS05625 0.44 -0.5 1,180,659 - -0.5 1,180,702 + +0.2 1,180,710 - +0.2 1,180,729 + -0.2 1,180,851 + BWI76_RS05630 0.14 +0.4 1,180,941 - BWI76_RS05630 0.19 +0.7 1,181,060 + BWI76_RS05630 0.24 +0.5 1,181,085 + BWI76_RS05630 0.25 -0.3 1,181,338 - BWI76_RS05630 0.38 -1.3
Or see this region's nucleotide sequence