Experiment: RCH2_defined_noCarbon with Mixed culture; Sinorhizobium meliloti 1021 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS01830 and BWI76_RS01835 are separated by 27 nucleotides BWI76_RS01835 and BWI76_RS01840 are separated by 55 nucleotides
BWI76_RS01830: BWI76_RS01830 - maltose ABC transporter, substrate-binding component MalE <small>(from data)</small>, at 373,299 to 374,489
_RS01830
BWI76_RS01835: BWI76_RS01835 - chemotaxis protein CheW, at 374,517 to 374,804
_RS01835
BWI76_RS01840: BWI76_RS01840 - maltose ABC transporter, ATPase component (MalK) <small>(from data)</small>, at 374,860 to 375,969
_RS01840
Position (kb) 374
375 Strain fitness (log2 ratio) -1
0
1 at 373.643 kb on + strand, within BWI76_RS01830 at 373.681 kb on + strand, within BWI76_RS01830 at 373.684 kb on - strand, within BWI76_RS01830 at 373.716 kb on - strand, within BWI76_RS01830 at 373.860 kb on + strand, within BWI76_RS01830 at 373.969 kb on - strand, within BWI76_RS01830 at 373.978 kb on + strand, within BWI76_RS01830 at 374.161 kb on + strand, within BWI76_RS01830 at 374.580 kb on + strand, within BWI76_RS01835 at 374.586 kb on + strand, within BWI76_RS01835 at 374.594 kb on - strand, within BWI76_RS01835 at 374.642 kb on + strand, within BWI76_RS01835 at 374.789 kb on + strand at 375.168 kb on - strand, within BWI76_RS01840 at 375.681 kb on + strand, within BWI76_RS01840
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Mixed culture; Sinorhizobium meliloti 1021 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x remove 373,643 + BWI76_RS01830 0.29 +0.1 373,681 + BWI76_RS01830 0.32 +0.2 373,684 - BWI76_RS01830 0.32 +0.5 373,716 - BWI76_RS01830 0.35 +0.7 373,860 + BWI76_RS01830 0.47 -0.3 373,969 - BWI76_RS01830 0.56 +1.5 373,978 + BWI76_RS01830 0.57 +0.1 374,161 + BWI76_RS01830 0.72 +0.4 374,580 + BWI76_RS01835 0.22 +1.1 374,586 + BWI76_RS01835 0.24 +0.2 374,594 - BWI76_RS01835 0.27 +0.5 374,642 + BWI76_RS01835 0.43 +1.2 374,789 + +0.5 375,168 - BWI76_RS01840 0.28 +0.1 375,681 + BWI76_RS01840 0.74 +0.8
Or see this region's nucleotide sequence