Strain Fitness in Sinorhizobium meliloti 1021 around SMc02373

Experiment: Sucrose (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSMc02372 and SMc02373 are separated by 264 nucleotidesSMc02373 and SMc02374 are separated by 37 nucleotidesSMc02374 and SMc02375 are separated by 138 nucleotides SMc02372: SMc02372 - transport transmembrane protein, at 1,125,728 to 1,127,017 SMc02372 SMc02373: SMc02373 - hypothetical protein, at 1,127,282 to 1,127,437 SMc02373 SMc02374: SMc02374 - hypothetical protein, at 1,127,475 to 1,127,651 SMc02374 SMc02375: SMc02375 - hypothetical protein, at 1,127,790 to 1,128,650 SMc02375 Position (kb) 1127 1128Strain fitness (log2 ratio) -1 0 1 2at 1126.429 kb on - strand, within SMc02372at 1126.546 kb on + strand, within SMc02372at 1126.546 kb on + strand, within SMc02372at 1126.546 kb on + strand, within SMc02372at 1126.546 kb on + strand, within SMc02372at 1126.576 kb on - strand, within SMc02372at 1126.576 kb on - strand, within SMc02372at 1126.576 kb on - strand, within SMc02372at 1126.615 kb on - strand, within SMc02372at 1126.683 kb on + strand, within SMc02372at 1126.683 kb on + strand, within SMc02372at 1126.683 kb on + strand, within SMc02372at 1126.684 kb on - strand, within SMc02372at 1126.938 kb on + strandat 1126.938 kb on + strandat 1126.939 kb on - strandat 1126.939 kb on - strandat 1127.284 kb on - strandat 1127.355 kb on + strand, within SMc02373at 1127.356 kb on - strand, within SMc02373

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Sucrose (C)
remove
1,126,429 - SMc02372 0.54 +0.2
1,126,546 + SMc02372 0.63 +1.8
1,126,546 + SMc02372 0.63 +0.5
1,126,546 + SMc02372 0.63 -0.7
1,126,546 + SMc02372 0.63 +0.7
1,126,576 - SMc02372 0.66 +0.4
1,126,576 - SMc02372 0.66 -0.2
1,126,576 - SMc02372 0.66 -0.3
1,126,615 - SMc02372 0.69 -0.5
1,126,683 + SMc02372 0.74 +0.8
1,126,683 + SMc02372 0.74 -1.5
1,126,683 + SMc02372 0.74 +0.3
1,126,684 - SMc02372 0.74 -0.4
1,126,938 + -0.8
1,126,938 + +0.2
1,126,939 - +0.2
1,126,939 - +0.3
1,127,284 - +0.5
1,127,355 + SMc02373 0.47 -0.4
1,127,356 - SMc02373 0.47 -0.9

Or see this region's nucleotide sequence