Experiment: Sucrose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0805 and SMa0806 are separated by 359 nucleotides SMa0806 and SMa0809 are separated by 242 nucleotides
SMa0805: SMa0805 - GabD4 succinate-semialdehyde dehdyrogenase, at 439,799 to 441,271
SMa0805
SMa0806: SMa0806 - SyrB-like regulator, at 441,631 to 442,086
SMa0806
SMa0809: SMa0809 - hypothetical protein, at 442,329 to 442,967
SMa0809
Position (kb) 441
442
443 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 441.121 kb on - strand, within SMa0805 at 441.145 kb on + strand at 441.145 kb on + strand at 441.169 kb on - strand at 441.221 kb on + strand at 441.222 kb on - strand at 441.236 kb on + strand at 441.252 kb on - strand at 441.307 kb on - strand at 441.314 kb on - strand at 441.360 kb on + strand at 441.360 kb on + strand at 441.360 kb on + strand at 441.361 kb on - strand at 441.504 kb on - strand at 441.504 kb on - strand at 441.614 kb on + strand at 441.789 kb on + strand, within SMa0806 at 441.789 kb on + strand, within SMa0806 at 441.789 kb on + strand, within SMa0806 at 441.790 kb on - strand, within SMa0806 at 441.879 kb on + strand, within SMa0806 at 441.882 kb on - strand, within SMa0806 at 441.918 kb on + strand, within SMa0806 at 441.952 kb on - strand, within SMa0806 at 442.252 kb on + strand at 442.252 kb on + strand at 442.254 kb on + strand at 442.255 kb on - strand at 442.415 kb on + strand at 442.452 kb on - strand, within SMa0809 at 442.576 kb on + strand, within SMa0809 at 442.576 kb on + strand, within SMa0809 at 442.577 kb on - strand, within SMa0809 at 442.844 kb on - strand, within SMa0809 at 442.844 kb on - strand, within SMa0809 at 442.987 kb on - strand at 443.049 kb on + strand at 443.050 kb on - strand at 443.050 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Sucrose (C) remove 441,121 - SMa0805 0.90 -0.8 441,145 + -0.7 441,145 + -0.0 441,169 - -0.4 441,221 + -0.3 441,222 - -0.1 441,236 + -0.2 441,252 - -3.2 441,307 - +1.0 441,314 - +1.9 441,360 + +0.5 441,360 + -0.2 441,360 + -0.3 441,361 - -0.3 441,504 - -0.1 441,504 - +0.2 441,614 + -0.9 441,789 + SMa0806 0.35 +1.9 441,789 + SMa0806 0.35 -0.7 441,789 + SMa0806 0.35 -0.9 441,790 - SMa0806 0.35 -0.3 441,879 + SMa0806 0.54 -0.1 441,882 - SMa0806 0.55 -0.4 441,918 + SMa0806 0.63 -0.6 441,952 - SMa0806 0.70 -0.9 442,252 + +0.1 442,252 + -1.1 442,254 + -0.8 442,255 - +0.3 442,415 + -1.5 442,452 - SMa0809 0.19 -0.5 442,576 + SMa0809 0.39 -0.2 442,576 + SMa0809 0.39 -0.3 442,577 - SMa0809 0.39 -0.1 442,844 - SMa0809 0.81 -0.1 442,844 - SMa0809 0.81 +1.6 442,987 - -0.3 443,049 + -1.0 443,050 - +1.1 443,050 - -0.4
Or see this region's nucleotide sequence