Experiment: Sucrose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20535 and SM_b20536 overlap by 4 nucleotides SM_b20536 and SM_b20537 overlap by 4 nucleotides
SM_b20535: SM_b20535 - dehydrogenase, at 558,359 to 559,369
_b20535
SM_b20536: SM_b20536 - hypothetical protein, at 559,366 to 561,219
_b20536
SM_b20537: SM_b20537 - transcriptional regulator, at 561,216 to 562,244
_b20537
Position (kb) 559
560
561
562 Strain fitness (log2 ratio) -1
0
1
2 at 558.487 kb on + strand, within SM_b20535 at 558.503 kb on + strand, within SM_b20535 at 558.519 kb on + strand, within SM_b20535 at 558.520 kb on - strand, within SM_b20535 at 558.665 kb on - strand, within SM_b20535 at 558.754 kb on + strand, within SM_b20535 at 558.755 kb on - strand, within SM_b20535 at 558.755 kb on - strand, within SM_b20535 at 558.774 kb on - strand, within SM_b20535 at 558.816 kb on + strand, within SM_b20535 at 558.816 kb on + strand, within SM_b20535 at 558.966 kb on + strand, within SM_b20535 at 558.966 kb on + strand, within SM_b20535 at 559.321 kb on - strand at 559.869 kb on + strand, within SM_b20536 at 559.998 kb on - strand, within SM_b20536 at 560.128 kb on + strand, within SM_b20536 at 560.129 kb on - strand, within SM_b20536 at 560.225 kb on + strand, within SM_b20536 at 560.225 kb on + strand, within SM_b20536 at 560.259 kb on + strand, within SM_b20536 at 560.260 kb on - strand, within SM_b20536 at 560.432 kb on + strand, within SM_b20536 at 560.433 kb on - strand, within SM_b20536 at 560.558 kb on + strand, within SM_b20536 at 560.558 kb on + strand, within SM_b20536 at 560.570 kb on + strand, within SM_b20536 at 560.570 kb on + strand, within SM_b20536 at 560.594 kb on + strand, within SM_b20536 at 560.594 kb on + strand, within SM_b20536 at 560.595 kb on - strand, within SM_b20536 at 560.595 kb on - strand, within SM_b20536 at 560.595 kb on - strand, within SM_b20536 at 560.595 kb on - strand, within SM_b20536 at 560.595 kb on - strand, within SM_b20536 at 560.595 kb on - strand, within SM_b20536 at 560.645 kb on + strand, within SM_b20536 at 560.645 kb on + strand, within SM_b20536 at 560.645 kb on + strand, within SM_b20536 at 560.646 kb on - strand, within SM_b20536 at 560.646 kb on - strand, within SM_b20536 at 560.670 kb on - strand, within SM_b20536 at 560.751 kb on + strand, within SM_b20536 at 560.752 kb on - strand, within SM_b20536 at 560.762 kb on + strand, within SM_b20536 at 560.763 kb on - strand, within SM_b20536 at 560.789 kb on + strand, within SM_b20536 at 560.822 kb on - strand, within SM_b20536 at 561.113 kb on + strand at 561.212 kb on + strand at 561.212 kb on + strand at 561.212 kb on + strand at 561.212 kb on + strand at 561.212 kb on + strand at 561.213 kb on - strand at 561.213 kb on - strand at 561.213 kb on - strand at 561.213 kb on - strand at 561.436 kb on - strand, within SM_b20537 at 561.570 kb on - strand, within SM_b20537 at 561.771 kb on + strand, within SM_b20537 at 561.772 kb on - strand, within SM_b20537 at 561.772 kb on - strand, within SM_b20537 at 561.894 kb on - strand, within SM_b20537 at 562.003 kb on + strand, within SM_b20537 at 562.123 kb on - strand, within SM_b20537 at 562.123 kb on - strand, within SM_b20537 at 562.176 kb on - strand at 562.180 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Sucrose (C) remove 558,487 + SM_b20535 0.13 +1.3 558,503 + SM_b20535 0.14 +0.4 558,519 + SM_b20535 0.16 +1.0 558,520 - SM_b20535 0.16 -0.5 558,665 - SM_b20535 0.30 +0.8 558,754 + SM_b20535 0.39 -0.6 558,755 - SM_b20535 0.39 -1.3 558,755 - SM_b20535 0.39 +1.9 558,774 - SM_b20535 0.41 +1.0 558,816 + SM_b20535 0.45 +1.2 558,816 + SM_b20535 0.45 +0.0 558,966 + SM_b20535 0.60 +0.9 558,966 + SM_b20535 0.60 -0.5 559,321 - +0.4 559,869 + SM_b20536 0.27 +0.4 559,998 - SM_b20536 0.34 -1.2 560,128 + SM_b20536 0.41 +0.1 560,129 - SM_b20536 0.41 -0.4 560,225 + SM_b20536 0.46 +0.9 560,225 + SM_b20536 0.46 +0.3 560,259 + SM_b20536 0.48 +0.8 560,260 - SM_b20536 0.48 -0.2 560,432 + SM_b20536 0.57 -0.0 560,433 - SM_b20536 0.58 +1.2 560,558 + SM_b20536 0.64 +0.0 560,558 + SM_b20536 0.64 -0.1 560,570 + SM_b20536 0.65 +1.1 560,570 + SM_b20536 0.65 +0.1 560,594 + SM_b20536 0.66 +0.7 560,594 + SM_b20536 0.66 +0.8 560,595 - SM_b20536 0.66 +0.3 560,595 - SM_b20536 0.66 +0.4 560,595 - SM_b20536 0.66 +0.5 560,595 - SM_b20536 0.66 -0.3 560,595 - SM_b20536 0.66 +0.9 560,595 - SM_b20536 0.66 +0.2 560,645 + SM_b20536 0.69 +0.6 560,645 + SM_b20536 0.69 -0.1 560,645 + SM_b20536 0.69 +0.2 560,646 - SM_b20536 0.69 +0.6 560,646 - SM_b20536 0.69 +0.4 560,670 - SM_b20536 0.70 -0.1 560,751 + SM_b20536 0.75 +0.5 560,752 - SM_b20536 0.75 +0.6 560,762 + SM_b20536 0.75 -0.9 560,763 - SM_b20536 0.75 -0.4 560,789 + SM_b20536 0.77 -0.0 560,822 - SM_b20536 0.79 +0.8 561,113 + +0.1 561,212 + -0.6 561,212 + +0.3 561,212 + +1.7 561,212 + +0.2 561,212 + +1.5 561,213 - +0.2 561,213 - +0.1 561,213 - +0.2 561,213 - +0.1 561,436 - SM_b20537 0.21 +0.7 561,570 - SM_b20537 0.34 +0.7 561,771 + SM_b20537 0.54 +0.5 561,772 - SM_b20537 0.54 -0.3 561,772 - SM_b20537 0.54 -0.9 561,894 - SM_b20537 0.66 -1.2 562,003 + SM_b20537 0.76 -0.7 562,123 - SM_b20537 0.88 -0.4 562,123 - SM_b20537 0.88 +0.0 562,176 - +0.9 562,180 - +0.7
Or see this region's nucleotide sequence