Experiment: D-Trehalose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc03061 and SMc03062 are separated by 251 nucleotides SMc03062 and SMc03063 are separated by 1 nucleotides
SMc03061: SMc03061 - ABC transporter for D-maltose/D-trehalose/sucrose, substrate-binding component (AglE) <small>(from data)</small>, at 757,756 to 759,132
SMc03061
SMc03062: SMc03062 - ABC transporter for D-maltose/D-trehalose/sucrose, permease component 1 (AglF) <small>(from data)</small>, at 759,384 to 760,394
SMc03062
SMc03063: SMc03063 - ABC transporter for D-maltose/D-trehalose/sucrose, permease component 2 (AglG) <small>(from data)</small>, at 760,396 to 761,538
SMc03063
Position (kb) 759
760
761 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1 at 758.492 kb on - strand, within SMc03061 at 758.492 kb on - strand, within SMc03061 at 758.516 kb on + strand, within SMc03061 at 758.517 kb on - strand, within SMc03061 at 758.668 kb on + strand, within SMc03061 at 758.668 kb on + strand, within SMc03061 at 758.669 kb on - strand, within SMc03061 at 758.669 kb on - strand, within SMc03061 at 758.669 kb on - strand, within SMc03061 at 758.746 kb on + strand, within SMc03061 at 758.746 kb on + strand, within SMc03061 at 758.746 kb on + strand, within SMc03061 at 758.746 kb on + strand, within SMc03061 at 758.747 kb on - strand, within SMc03061 at 758.747 kb on - strand, within SMc03061 at 758.782 kb on - strand, within SMc03061 at 758.914 kb on + strand, within SMc03061 at 758.939 kb on - strand, within SMc03061 at 759.105 kb on - strand at 759.212 kb on - strand at 759.212 kb on - strand at 759.212 kb on - strand at 759.212 kb on - strand at 759.312 kb on + strand at 759.313 kb on - strand at 759.330 kb on + strand at 759.330 kb on + strand at 759.331 kb on - strand at 759.589 kb on - strand, within SMc03062 at 759.589 kb on - strand, within SMc03062 at 759.598 kb on - strand, within SMc03062 at 759.670 kb on - strand, within SMc03062 at 759.806 kb on + strand, within SMc03062 at 759.879 kb on + strand, within SMc03062 at 759.880 kb on - strand, within SMc03062 at 760.818 kb on + strand, within SMc03063 at 760.855 kb on + strand, within SMc03063 at 760.855 kb on + strand, within SMc03063 at 760.856 kb on - strand, within SMc03063 at 760.856 kb on - strand, within SMc03063 at 760.856 kb on - strand, within SMc03063 at 760.964 kb on - strand, within SMc03063 at 761.071 kb on + strand, within SMc03063 at 761.071 kb on + strand, within SMc03063 at 761.072 kb on - strand, within SMc03063 at 761.072 kb on - strand, within SMc03063 at 761.072 kb on - strand, within SMc03063 at 761.073 kb on + strand, within SMc03063 at 761.073 kb on + strand, within SMc03063 at 761.073 kb on + strand, within SMc03063 at 761.073 kb on + strand, within SMc03063 at 761.074 kb on - strand, within SMc03063 at 761.074 kb on - strand, within SMc03063 at 761.113 kb on + strand, within SMc03063 at 761.113 kb on + strand, within SMc03063 at 761.113 kb on + strand, within SMc03063 at 761.113 kb on + strand, within SMc03063 at 761.113 kb on + strand, within SMc03063 at 761.113 kb on + strand, within SMc03063 at 761.113 kb on + strand, within SMc03063 at 761.113 kb on + strand, within SMc03063 at 761.114 kb on - strand, within SMc03063 at 761.114 kb on - strand, within SMc03063 at 761.114 kb on - strand, within SMc03063 at 761.114 kb on - strand, within SMc03063 at 761.114 kb on - strand, within SMc03063 at 761.114 kb on - strand, within SMc03063 at 761.114 kb on - strand, within SMc03063 at 761.114 kb on - strand, within SMc03063 at 761.114 kb on - strand, within SMc03063 at 761.115 kb on + strand, within SMc03063 at 761.115 kb on + strand, within SMc03063 at 761.115 kb on + strand, within SMc03063 at 761.164 kb on + strand, within SMc03063 at 761.165 kb on - strand, within SMc03063 at 761.165 kb on - strand, within SMc03063 at 761.165 kb on - strand, within SMc03063 at 761.179 kb on + strand, within SMc03063 at 761.180 kb on - strand, within SMc03063
Per-strain Table
Position Strand Gene LocusTag Fraction D-Trehalose (C) remove 758,492 - SMc03061 0.53 -2.3 758,492 - SMc03061 0.53 -2.2 758,516 + SMc03061 0.55 -3.2 758,517 - SMc03061 0.55 +0.5 758,668 + SMc03061 0.66 -2.3 758,668 + SMc03061 0.66 -4.7 758,669 - SMc03061 0.66 -4.0 758,669 - SMc03061 0.66 -3.0 758,669 - SMc03061 0.66 -4.3 758,746 + SMc03061 0.72 -3.9 758,746 + SMc03061 0.72 -2.2 758,746 + SMc03061 0.72 -4.4 758,746 + SMc03061 0.72 -3.9 758,747 - SMc03061 0.72 -2.2 758,747 - SMc03061 0.72 -3.1 758,782 - SMc03061 0.75 -1.6 758,914 + SMc03061 0.84 -4.2 758,939 - SMc03061 0.86 -2.2 759,105 - -2.2 759,212 - -2.8 759,212 - -3.4 759,212 - -2.9 759,212 - -2.9 759,312 + +1.0 759,313 - -3.6 759,330 + +0.6 759,330 + -0.1 759,331 - -0.7 759,589 - SMc03062 0.20 -5.0 759,589 - SMc03062 0.20 -1.3 759,598 - SMc03062 0.21 -1.2 759,670 - SMc03062 0.28 -5.1 759,806 + SMc03062 0.42 -5.0 759,879 + SMc03062 0.49 -5.3 759,880 - SMc03062 0.49 -1.0 760,818 + SMc03063 0.37 -1.7 760,855 + SMc03063 0.40 -2.0 760,855 + SMc03063 0.40 -3.6 760,856 - SMc03063 0.40 -4.9 760,856 - SMc03063 0.40 -3.2 760,856 - SMc03063 0.40 -0.7 760,964 - SMc03063 0.50 -4.8 761,071 + SMc03063 0.59 -2.5 761,071 + SMc03063 0.59 -3.0 761,072 - SMc03063 0.59 -3.4 761,072 - SMc03063 0.59 -3.8 761,072 - SMc03063 0.59 -3.4 761,073 + SMc03063 0.59 -4.9 761,073 + SMc03063 0.59 -4.3 761,073 + SMc03063 0.59 -1.0 761,073 + SMc03063 0.59 -4.0 761,074 - SMc03063 0.59 -4.0 761,074 - SMc03063 0.59 -4.1 761,113 + SMc03063 0.63 -2.9 761,113 + SMc03063 0.63 -2.4 761,113 + SMc03063 0.63 -5.1 761,113 + SMc03063 0.63 -5.5 761,113 + SMc03063 0.63 -1.1 761,113 + SMc03063 0.63 -5.8 761,113 + SMc03063 0.63 -3.8 761,113 + SMc03063 0.63 -3.4 761,114 - SMc03063 0.63 -3.1 761,114 - SMc03063 0.63 -3.7 761,114 - SMc03063 0.63 -3.2 761,114 - SMc03063 0.63 -4.4 761,114 - SMc03063 0.63 -4.0 761,114 - SMc03063 0.63 -1.0 761,114 - SMc03063 0.63 -4.0 761,114 - SMc03063 0.63 -4.5 761,114 - SMc03063 0.63 -4.8 761,115 + SMc03063 0.63 -1.9 761,115 + SMc03063 0.63 -5.5 761,115 + SMc03063 0.63 -4.5 761,164 + SMc03063 0.67 -4.7 761,165 - SMc03063 0.67 -1.5 761,165 - SMc03063 0.67 -3.7 761,165 - SMc03063 0.67 -4.8 761,179 + SMc03063 0.69 -4.7 761,180 - SMc03063 0.69 -2.9
Or see this region's nucleotide sequence