Strain Fitness in Sinorhizobium meliloti 1021 around SMc01454

Experiment: D-Trehalose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc01453 and SMc01454 are separated by 314 nucleotidesSMc01454 and SMc01455 are separated by 100 nucleotides SMc01453: SMc01453 - transposase, at 2,293,220 to 2,294,383 SMc01453 SMc01454: SMc01454 - hypothetical protein, at 2,294,698 to 2,298,402 SMc01454 SMc01455: SMc01455 - D-lactate dehydrogenase (cytochrome) protein, at 2,298,503 to 2,299,909 SMc01455 Position (kb) 2294 2295 2296 2297 2298 2299Strain fitness (log2 ratio) -2 -1 0 1 2at 2294.375 kb on + strandat 2294.622 kb on + strandat 2294.622 kb on + strandat 2294.622 kb on + strandat 2294.622 kb on + strandat 2294.622 kb on + strandat 2294.700 kb on - strandat 2294.709 kb on + strandat 2294.709 kb on + strandat 2295.056 kb on - strandat 2295.335 kb on - strand, within SMc01454at 2295.424 kb on - strand, within SMc01454at 2295.838 kb on + strand, within SMc01454at 2295.877 kb on + strand, within SMc01454at 2296.054 kb on + strand, within SMc01454at 2296.055 kb on - strand, within SMc01454at 2296.055 kb on - strand, within SMc01454at 2296.161 kb on - strand, within SMc01454at 2296.161 kb on - strand, within SMc01454at 2296.466 kb on + strand, within SMc01454at 2296.555 kb on + strand, within SMc01454at 2296.556 kb on - strand, within SMc01454at 2296.580 kb on + strand, within SMc01454at 2296.580 kb on + strand, within SMc01454at 2296.581 kb on - strand, within SMc01454at 2296.595 kb on - strand, within SMc01454at 2296.626 kb on + strand, within SMc01454at 2296.656 kb on + strand, within SMc01454at 2297.394 kb on + strand, within SMc01454at 2297.581 kb on - strand, within SMc01454at 2297.582 kb on + strand, within SMc01454at 2297.615 kb on + strand, within SMc01454at 2297.615 kb on + strand, within SMc01454at 2297.616 kb on - strand, within SMc01454at 2298.033 kb on + strandat 2298.033 kb on + strandat 2298.133 kb on + strandat 2298.907 kb on - strand, within SMc01455at 2299.130 kb on + strand, within SMc01455at 2299.233 kb on - strand, within SMc01455

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Trehalose (C)
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2,294,375 + -1.0
2,294,622 + +0.9
2,294,622 + +0.6
2,294,622 + -0.0
2,294,622 + +0.0
2,294,622 + +1.9
2,294,700 - +1.0
2,294,709 + -0.1
2,294,709 + -0.6
2,295,056 - -0.7
2,295,335 - SMc01454 0.17 -2.0
2,295,424 - SMc01454 0.20 -0.9
2,295,838 + SMc01454 0.31 -2.5
2,295,877 + SMc01454 0.32 -0.4
2,296,054 + SMc01454 0.37 -1.6
2,296,055 - SMc01454 0.37 -1.6
2,296,055 - SMc01454 0.37 -1.0
2,296,161 - SMc01454 0.39 +0.4
2,296,161 - SMc01454 0.39 -0.9
2,296,466 + SMc01454 0.48 -0.7
2,296,555 + SMc01454 0.50 +0.1
2,296,556 - SMc01454 0.50 -0.9
2,296,580 + SMc01454 0.51 -0.6
2,296,580 + SMc01454 0.51 -1.0
2,296,581 - SMc01454 0.51 -1.0
2,296,595 - SMc01454 0.51 +0.7
2,296,626 + SMc01454 0.52 -0.8
2,296,656 + SMc01454 0.53 +0.4
2,297,394 + SMc01454 0.73 -0.9
2,297,581 - SMc01454 0.78 -1.5
2,297,582 + SMc01454 0.78 -0.0
2,297,615 + SMc01454 0.79 -2.3
2,297,615 + SMc01454 0.79 +0.1
2,297,616 - SMc01454 0.79 -1.3
2,298,033 + -0.7
2,298,033 + -1.2
2,298,133 + -0.6
2,298,907 - SMc01455 0.29 -1.5
2,299,130 + SMc01455 0.45 +0.3
2,299,233 - SMc01455 0.52 -0.0

Or see this region's nucleotide sequence