Strain Fitness in Sinorhizobium meliloti 1021 around SM_b21595

Experiment: D-Trehalose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b21594 and SM_b21595 are separated by 169 nucleotidesSM_b21595 and SM_b21596 are separated by 64 nucleotidesSM_b21596 and SM_b21597 are separated by 13 nucleotides SM_b21594: SM_b21594 - sugar uptake ABC transporter permease, at 1,134,374 to 1,135,276 _b21594 SM_b21595: SM_b21595 - sugar uptake ABC transporter substrate-binding protein precursor, at 1,135,446 to 1,136,678 _b21595 SM_b21596: SM_b21596 - hypothetical protein, at 1,136,743 to 1,137,645 _b21596 SM_b21597: SM_b21597 - exported oxidoreductase, at 1,137,659 to 1,138,690 _b21597 Position (kb) 1135 1136 1137Strain fitness (log2 ratio) -3 -2 -1 0 1at 1134.477 kb on + strand, within SM_b21594at 1134.478 kb on - strand, within SM_b21594at 1134.478 kb on - strand, within SM_b21594at 1134.508 kb on - strand, within SM_b21594at 1134.526 kb on + strand, within SM_b21594at 1134.526 kb on + strand, within SM_b21594at 1134.527 kb on - strand, within SM_b21594at 1134.527 kb on - strand, within SM_b21594at 1134.527 kb on - strand, within SM_b21594at 1134.690 kb on + strand, within SM_b21594at 1134.690 kb on + strand, within SM_b21594at 1134.760 kb on + strand, within SM_b21594at 1134.760 kb on + strand, within SM_b21594at 1134.760 kb on + strand, within SM_b21594at 1134.998 kb on + strand, within SM_b21594at 1134.998 kb on + strand, within SM_b21594at 1135.088 kb on - strand, within SM_b21594at 1135.170 kb on + strand, within SM_b21594at 1135.170 kb on + strand, within SM_b21594at 1135.171 kb on - strand, within SM_b21594at 1135.171 kb on - strand, within SM_b21594at 1135.252 kb on + strandat 1135.262 kb on + strandat 1135.263 kb on - strandat 1135.416 kb on + strandat 1135.464 kb on + strandat 1135.542 kb on - strandat 1135.871 kb on + strand, within SM_b21595at 1135.871 kb on + strand, within SM_b21595at 1135.928 kb on + strand, within SM_b21595at 1135.928 kb on + strand, within SM_b21595at 1135.928 kb on + strand, within SM_b21595at 1136.126 kb on - strand, within SM_b21595at 1136.236 kb on + strand, within SM_b21595at 1136.236 kb on + strand, within SM_b21595at 1136.237 kb on - strand, within SM_b21595at 1136.240 kb on - strand, within SM_b21595at 1136.240 kb on - strand, within SM_b21595at 1136.240 kb on - strand, within SM_b21595at 1136.278 kb on + strand, within SM_b21595at 1136.320 kb on + strand, within SM_b21595at 1136.320 kb on + strand, within SM_b21595at 1136.321 kb on - strand, within SM_b21595at 1136.321 kb on - strand, within SM_b21595at 1136.592 kb on + strandat 1136.592 kb on + strandat 1136.662 kb on + strandat 1136.662 kb on + strandat 1136.666 kb on + strandat 1136.667 kb on - strandat 1136.834 kb on + strand, within SM_b21596at 1136.836 kb on + strand, within SM_b21596at 1136.836 kb on + strand, within SM_b21596at 1136.836 kb on + strand, within SM_b21596at 1136.837 kb on - strand, within SM_b21596at 1137.012 kb on + strand, within SM_b21596at 1137.029 kb on - strand, within SM_b21596at 1137.075 kb on - strand, within SM_b21596at 1137.075 kb on - strand, within SM_b21596at 1137.135 kb on - strand, within SM_b21596at 1137.275 kb on + strand, within SM_b21596at 1137.572 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Trehalose (C)
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1,134,477 + SM_b21594 0.11 +0.1
1,134,478 - SM_b21594 0.12 +0.3
1,134,478 - SM_b21594 0.12 -0.2
1,134,508 - SM_b21594 0.15 +0.5
1,134,526 + SM_b21594 0.17 +0.1
1,134,526 + SM_b21594 0.17 -0.1
1,134,527 - SM_b21594 0.17 +0.3
1,134,527 - SM_b21594 0.17 +0.3
1,134,527 - SM_b21594 0.17 +1.5
1,134,690 + SM_b21594 0.35 +0.0
1,134,690 + SM_b21594 0.35 +1.3
1,134,760 + SM_b21594 0.43 +0.2
1,134,760 + SM_b21594 0.43 -0.4
1,134,760 + SM_b21594 0.43 +0.3
1,134,998 + SM_b21594 0.69 +0.5
1,134,998 + SM_b21594 0.69 +0.0
1,135,088 - SM_b21594 0.79 -0.2
1,135,170 + SM_b21594 0.88 -0.2
1,135,170 + SM_b21594 0.88 -0.2
1,135,171 - SM_b21594 0.88 +0.1
1,135,171 - SM_b21594 0.88 +0.4
1,135,252 + -0.1
1,135,262 + +0.1
1,135,263 - -0.1
1,135,416 + -0.8
1,135,464 + +0.5
1,135,542 - +0.0
1,135,871 + SM_b21595 0.34 +0.7
1,135,871 + SM_b21595 0.34 -0.0
1,135,928 + SM_b21595 0.39 +0.6
1,135,928 + SM_b21595 0.39 +0.5
1,135,928 + SM_b21595 0.39 +0.0
1,136,126 - SM_b21595 0.55 -0.4
1,136,236 + SM_b21595 0.64 +0.0
1,136,236 + SM_b21595 0.64 +0.1
1,136,237 - SM_b21595 0.64 +0.3
1,136,240 - SM_b21595 0.64 -0.3
1,136,240 - SM_b21595 0.64 -3.2
1,136,240 - SM_b21595 0.64 +0.0
1,136,278 + SM_b21595 0.67 -0.3
1,136,320 + SM_b21595 0.71 -0.1
1,136,320 + SM_b21595 0.71 +1.1
1,136,321 - SM_b21595 0.71 +0.2
1,136,321 - SM_b21595 0.71 -1.2
1,136,592 + -0.0
1,136,592 + -0.3
1,136,662 + -0.4
1,136,662 + +0.1
1,136,666 + +0.9
1,136,667 - +0.7
1,136,834 + SM_b21596 0.10 -0.0
1,136,836 + SM_b21596 0.10 +0.5
1,136,836 + SM_b21596 0.10 -0.2
1,136,836 + SM_b21596 0.10 +0.3
1,136,837 - SM_b21596 0.10 -0.1
1,137,012 + SM_b21596 0.30 -0.7
1,137,029 - SM_b21596 0.32 -0.2
1,137,075 - SM_b21596 0.37 +1.1
1,137,075 - SM_b21596 0.37 -0.9
1,137,135 - SM_b21596 0.43 -1.0
1,137,275 + SM_b21596 0.59 -0.6
1,137,572 - +0.0

Or see this region's nucleotide sequence