Strain Fitness in Sinorhizobium meliloti 1021 around SM_b21421

Experiment: D-Trehalose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b21420 and SM_b21421 are separated by 73 nucleotidesSM_b21421 and SM_b21422 overlap by 4 nucleotides SM_b21420: SM_b21420 - L-arabinose isomerase, at 1,350,177 to 1,351,604 _b21420 SM_b21421: SM_b21421 - sugar uptake ABC transporter substrate-binding protein precursor, at 1,351,678 to 1,352,739 _b21421 SM_b21422: SM_b21422 - sugar uptake ABC transporter ATP-binding protein, at 1,352,736 to 1,354,232 _b21422 Position (kb) 1351 1352 1353Strain fitness (log2 ratio) -2 -1 0 1 2at 1350.723 kb on - strand, within SM_b21420at 1350.750 kb on + strand, within SM_b21420at 1350.751 kb on - strand, within SM_b21420at 1350.751 kb on - strand, within SM_b21420at 1350.751 kb on - strand, within SM_b21420at 1350.751 kb on - strand, within SM_b21420at 1350.751 kb on - strand, within SM_b21420at 1350.751 kb on - strand, within SM_b21420at 1350.752 kb on + strand, within SM_b21420at 1350.771 kb on + strand, within SM_b21420at 1350.771 kb on + strand, within SM_b21420at 1350.771 kb on + strand, within SM_b21420at 1350.772 kb on - strand, within SM_b21420at 1351.011 kb on + strand, within SM_b21420at 1351.012 kb on - strand, within SM_b21420at 1351.015 kb on - strand, within SM_b21420at 1351.015 kb on - strand, within SM_b21420at 1351.017 kb on + strand, within SM_b21420at 1351.041 kb on + strand, within SM_b21420at 1351.041 kb on + strand, within SM_b21420at 1351.042 kb on - strand, within SM_b21420at 1351.188 kb on + strand, within SM_b21420at 1351.189 kb on - strand, within SM_b21420at 1351.189 kb on - strand, within SM_b21420at 1351.273 kb on + strand, within SM_b21420at 1351.273 kb on + strand, within SM_b21420at 1351.274 kb on - strand, within SM_b21420at 1351.274 kb on - strand, within SM_b21420at 1351.274 kb on - strand, within SM_b21420at 1351.290 kb on + strand, within SM_b21420at 1351.393 kb on + strand, within SM_b21420at 1351.393 kb on + strand, within SM_b21420at 1351.393 kb on + strand, within SM_b21420at 1351.393 kb on + strand, within SM_b21420at 1351.394 kb on - strand, within SM_b21420at 1351.394 kb on - strand, within SM_b21420at 1351.394 kb on - strand, within SM_b21420at 1351.394 kb on - strand, within SM_b21420at 1351.394 kb on - strand, within SM_b21420at 1351.583 kb on - strandat 1351.583 kb on - strandat 1351.650 kb on + strandat 1351.651 kb on - strandat 1351.651 kb on - strandat 1351.651 kb on - strandat 1351.651 kb on - strandat 1351.651 kb on - strandat 1351.651 kb on - strandat 1351.651 kb on - strandat 1351.651 kb on - strandat 1351.651 kb on - strandat 1351.653 kb on - strandat 1352.203 kb on - strand, within SM_b21421at 1352.233 kb on + strand, within SM_b21421at 1352.234 kb on - strand, within SM_b21421at 1352.591 kb on - strand, within SM_b21421at 1352.605 kb on + strand, within SM_b21421at 1352.758 kb on + strandat 1353.205 kb on + strand, within SM_b21422at 1353.205 kb on + strand, within SM_b21422at 1353.206 kb on - strand, within SM_b21422at 1353.321 kb on + strand, within SM_b21422at 1353.321 kb on + strand, within SM_b21422at 1353.322 kb on - strand, within SM_b21422at 1353.402 kb on - strand, within SM_b21422at 1353.402 kb on - strand, within SM_b21422at 1353.437 kb on - strand, within SM_b21422at 1353.437 kb on - strand, within SM_b21422at 1353.437 kb on - strand, within SM_b21422at 1353.593 kb on + strand, within SM_b21422at 1353.666 kb on + strand, within SM_b21422at 1353.666 kb on + strand, within SM_b21422at 1353.666 kb on + strand, within SM_b21422at 1353.666 kb on + strand, within SM_b21422at 1353.667 kb on - strand, within SM_b21422at 1353.667 kb on - strand, within SM_b21422at 1353.667 kb on - strand, within SM_b21422at 1353.724 kb on + strand, within SM_b21422at 1353.724 kb on + strand, within SM_b21422at 1353.724 kb on + strand, within SM_b21422at 1353.733 kb on + strand, within SM_b21422

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Trehalose (C)
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1,350,723 - SM_b21420 0.38 -1.2
1,350,750 + SM_b21420 0.40 -0.9
1,350,751 - SM_b21420 0.40 +0.1
1,350,751 - SM_b21420 0.40 -0.2
1,350,751 - SM_b21420 0.40 -0.1
1,350,751 - SM_b21420 0.40 -1.4
1,350,751 - SM_b21420 0.40 +0.3
1,350,751 - SM_b21420 0.40 -0.2
1,350,752 + SM_b21420 0.40 -0.1
1,350,771 + SM_b21420 0.42 -0.2
1,350,771 + SM_b21420 0.42 +0.1
1,350,771 + SM_b21420 0.42 +0.5
1,350,772 - SM_b21420 0.42 -0.3
1,351,011 + SM_b21420 0.58 +0.9
1,351,012 - SM_b21420 0.58 -0.1
1,351,015 - SM_b21420 0.59 -0.1
1,351,015 - SM_b21420 0.59 +0.1
1,351,017 + SM_b21420 0.59 -0.2
1,351,041 + SM_b21420 0.61 -0.0
1,351,041 + SM_b21420 0.61 +0.2
1,351,042 - SM_b21420 0.61 -0.1
1,351,188 + SM_b21420 0.71 +0.6
1,351,189 - SM_b21420 0.71 -1.1
1,351,189 - SM_b21420 0.71 +0.4
1,351,273 + SM_b21420 0.77 -0.2
1,351,273 + SM_b21420 0.77 +0.9
1,351,274 - SM_b21420 0.77 +0.6
1,351,274 - SM_b21420 0.77 -0.6
1,351,274 - SM_b21420 0.77 +0.9
1,351,290 + SM_b21420 0.78 -0.8
1,351,393 + SM_b21420 0.85 -0.8
1,351,393 + SM_b21420 0.85 +0.3
1,351,393 + SM_b21420 0.85 -0.0
1,351,393 + SM_b21420 0.85 -0.6
1,351,394 - SM_b21420 0.85 +0.1
1,351,394 - SM_b21420 0.85 -0.6
1,351,394 - SM_b21420 0.85 -0.2
1,351,394 - SM_b21420 0.85 -0.3
1,351,394 - SM_b21420 0.85 -0.4
1,351,583 - -0.1
1,351,583 - +1.3
1,351,650 + -1.8
1,351,651 - +0.9
1,351,651 - -0.7
1,351,651 - -1.0
1,351,651 - +0.2
1,351,651 - -0.0
1,351,651 - -1.0
1,351,651 - -0.5
1,351,651 - +0.3
1,351,651 - +0.4
1,351,653 - -0.3
1,352,203 - SM_b21421 0.49 +0.2
1,352,233 + SM_b21421 0.52 +0.2
1,352,234 - SM_b21421 0.52 +1.3
1,352,591 - SM_b21421 0.86 +1.2
1,352,605 + SM_b21421 0.87 +1.0
1,352,758 + +0.2
1,353,205 + SM_b21422 0.31 +0.2
1,353,205 + SM_b21422 0.31 -0.1
1,353,206 - SM_b21422 0.31 -0.5
1,353,321 + SM_b21422 0.39 +1.9
1,353,321 + SM_b21422 0.39 -0.0
1,353,322 - SM_b21422 0.39 +0.1
1,353,402 - SM_b21422 0.44 -0.1
1,353,402 - SM_b21422 0.44 -0.3
1,353,437 - SM_b21422 0.47 +0.3
1,353,437 - SM_b21422 0.47 -1.4
1,353,437 - SM_b21422 0.47 -0.3
1,353,593 + SM_b21422 0.57 -0.1
1,353,666 + SM_b21422 0.62 -0.6
1,353,666 + SM_b21422 0.62 +0.6
1,353,666 + SM_b21422 0.62 +0.7
1,353,666 + SM_b21422 0.62 +0.2
1,353,667 - SM_b21422 0.62 +0.1
1,353,667 - SM_b21422 0.62 +0.1
1,353,667 - SM_b21422 0.62 -0.3
1,353,724 + SM_b21422 0.66 -0.1
1,353,724 + SM_b21422 0.66 -0.1
1,353,724 + SM_b21422 0.66 -1.0
1,353,733 + SM_b21422 0.67 -0.4

Or see this region's nucleotide sequence